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AT5G60960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G61370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21461eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB008269
EMBL:AY086450EMBL:CP002688EnsemblPlants:AT5G60960EnsemblPlants:AT5G60960.1
entrez:836217GeneID:836217Genevisible:Q9FME4GO:GO:0003723
GO:GO:0005634GO:GO:0005739GO:GO:0005759GO:GO:0006351
GO:GO:0006355GO:GO:0006417Gramene:AT5G60960.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF831HOGENOM:HOG000242430InParanoid:Q9FME4IntAct:Q9FME4
InterPro:IPR002885KEGG:ath:AT5G60960OMA:CRKKDPFPaxDb:Q9FME4
Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q9FME4
Pfscan:PS51375PhylomeDB:Q9FME4PRIDE:Q9FME4PRO:PR:Q9FME4
PROSITE:PS51375ProteinModelPortal:Q9FME4Proteomes:UP000006548RefSeq:NP_200904.1
SMR:Q9FME4STRING:3702.AT5G60960.1TAIR:AT5G60960TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.8467UniProt:Q9FME4
Coordinates (TAIR10) chr5:-:24528423..24529988
Molecular Weight (calculated) 59146.80 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.49
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPSLPSLQL RRLLLRSFIS SSSVNTLQSQ PRIISSKPLF SPLPPSRSSI FSTFPSRFFS SETNAESESL DSNEIALSFS KELTGNPDAE SQTISQRFNL
101: SFSHITPNPD LILQTLNLSP EAGRAALGFN EWLDSNSNFS HTDETVSFFV DYFGRRKDFK GMLEIISKYK GIAGGKTLES AIDRLVRAGR PKQVTDFFEK
201: MENDYGLKRD KESLTLVVKK LCEKGHASIA EKMVKNTANE IFPDENICDL LISGWCIAEK LDEATRLAGE MSRGGFEIGT KAYNMMLDCV CKLCRKKDPF
301: KLQPEVEKVL LEMEFRGVPR NTETFNVLIN NLCKIRRTEE AMTLFGRMGE WGCQPDAETY LVLIRSLYQA ARIGEGDEMI DKMKSAGYGE LLNKKEYYGF
401: LKILCGIERL EHAMSVFKSM KANGCKPGIK TYDLLMGKMC ANNQLTRANG LYKEAAKKGI AVSPKEYRVD PRFMKKKTKE VDSNVKKRET LPEKTARKKK
501: RLKQINMSFV KKPHNKMRRR M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)