AT1G44920.1::SUBA5

AT1G44920.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plastid 1.000
What is SUBAcon?

Predictors

External Curations

AmiGO : plastid 18431481
TAIR : plastid 18431481

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:31975158 (2020): plastid PMID:31932409 (2020): plastid PMID:31615849 (2019): plastid plastid thylakoid PMID:30962257 (2019): plastid PMID:29967049 (2018): plastid PMID:29104584 (2017): nucleus nuclear matrix nucleolus PMID:28865150 (2017): extracellular region plant-type cell wall PMID:24872594 (2014): plastid plastid envelope plastid inner membrane PMID:23851315 (2013): plastid PMID:21311031 (2011): plastid PMID:20061580 (2010): plastid plastid envelope PMID:18431481 (2008): plastid	PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT3G10640.1:None: PMID:24833385 (2014): AT2G22425.1:None: PMID:24833385 (2014): AT1G21240.1:None: PMID:24833385 (2014): AT4G20790.1:None: PMID:24833385 (2014): AT5G59650.1:None: PMID:24833385 (2014): AT1G29060.1:None: PMID:24833385 (2014): AT1G59730.1:None: PMID:24833385 (2014): AT4G05370.1:None: PMID:24833385 (2014): AT4G05380.1:None: PMID:21297037 (2011): AT5G60960.1:ubiquitin reconstruction:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT5G55710.1 plastid [6.92] AT2G01110.1 plastid [6.11] AT3G56010.1 plastid [6.03] AT1G14345.1 plastid [5.53] AT5G13510.1 plastid [5.48] AT1G31190.1 plastid [5.44] AT4G17600.1 plastid [5.38] AT3G12685.1 plastid [5.28] AT1G03680.1 plastid [5.28] AT2G30390.1 plastid [5.26]	AT4G05380.1 cytosol AT2G22425.1 endoplasmic reticulum AT3G12180.1 endoplasmic reticulum AT4G05370.1 extracellular AT1G29060.1 golgi AT1G59730.1 golgi AT3G10640.1 nucleus AT1G21240.1 plasma membrane AT4G20790.1 plasma membrane AT5G59650.1 plasma membrane

Description (TAIR10)

protein_coding :

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410IW1J	eggNOG:ENOG4111ZN7	EMBL:AC020576	EMBL:AF370316
EMBL:AY063101	EMBL:CP002684	EnsemblPlants:AT1G44920	EnsemblPlants:AT1G44920.1
entrez:841058	GeneID:841058	GO:GO:0009507	GO:GO:0016021
Gramene:AT1G44920.1	hmmpanther:PTHR35283	hmmpanther:PTHR35283:SF2	IntAct:Q9LPD7
InterPro:IPR021414	KEGG:ath:AT1G44920	OMA:GIFFYTC	Pfam:PF11255
PhylomeDB:Q9LPD7	Proteomes:UP000006548	RefSeq:NP_564492.1	STRING:3702.AT1G44920.1
TAIR:AT1G44920	TCDB:9.B.185.1.4	TMHMM:TMhelix	UniGene:At.14888
UniGene:At.28268	UniGene:At.70826	UniProt:Q9LPD7

Coordinates (TAIR10)

chr1:-:16983229..16984408

Molecular Weight (calculated)

27716.50 Da

IEP (calculated)

10.68

GRAVY (calculated)

0.14

Length

258 amino acids

Sequence (TAIR10)
(BLAST)

001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW