AT4G20790.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:11134775..11136423 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59729.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 518 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSLFFIFF LTSLLSSYLP LSVFSATVVE DLANLSPPPD FNTTISNNCL RDPMLRYCNN TSSSPMDIVE IFRSTIVASH LCNESKNPNC VESFPRIRIH 101: GRPKTAALYL SFDFFWKYCP LTVVDIELVN NSLTNGFPTN VLSCAQIRTL DLSYNQFSGF VPVQDLSGLP NLTHLNLSYN RFSENKISDS EFFKRFNASS 201: FIQSGVLPNV KRYKMKVLVL LIVFPIMVIL LCFCFGWLCV KRPDYLPRTC RRRNKFTFAM LEAATDEFSD QHLVSMSNTV DIYKGTLRDG TETKIEVYKE 301: KVSSEKRREF AEVCEMVFKL RHKNLVRVLG WCNSRNMRAL VTEWIQGENV ETWLSSSMAL SWRRRLRVVL GVVEGICYLS DQWPEITFDL TTSSVLLSDD 401: NQEPLISHFK IGDRNNLSTN IFNFGLFFVE MITNLRPDLG QEDSERRYLE YIRVHYPDNL ERVIDEKMKI EGRTFDQVKQ AITLGLMCTD IIPPLKQPSL 501: TQIYDLVSSL YESSSRHH |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)