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AT1G63110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.548
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GPI transamidase subunit PIG-U
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GPI transamidase subunit PIG-U; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G12730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XST9eggNOG:KOG2552EMBL:CP002684EnsemblPlants:AT1G63110
EnsemblPlants:AT1G63110.1entrez:842615ExpressionAtlas:F4I1Z0GeneID:842615
GO:GO:0005886GO:GO:0006506GO:GO:0016021Gramene:AT1G63110.1
hmmpanther:PTHR13121InParanoid:F4I1Z0InterPro:IPR009600OMA:GKEIRQI
PANTHER:PTHR13121PaxDb:F4I1Z0Pfam:PF06728PhylomeDB:F4I1Z0
PRIDE:F4I1Z0ProteinModelPortal:F4I1Z0Proteomes:UP000006548RefSeq:NP_850969.2
STRING:3702.AT1G63110.1TAIR:AT1G63110TMHMM:TMhelixUniGene:At.17754
UniProt:F4I1Z0
Coordinates (TAIR10) chr1:+:23404870..23407757
Molecular Weight (calculated) 52821.60 Da
IEP (calculated) 9.80
GRAVY (calculated) 0.57
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEQKMKQL SRFWIWALSS IAFRLILISF PGNLNLSSRP EVSTPLTSIR RLAEGYWLKQ ASMSPYAGSM YHGSPLLLSV LGPLTVQRIK GQPSHLLCSL
101: VFVIADILSA MLLRAIGQKL QMAYGLNARL LGFLKSSRDK VILPCGDIAA LVYLWNPFTI VSCVGLSTSP IENLAVILAL FGAVTRRVPL AAFGLVIATH
201: LSLYPATLTI PIIFLLGYGL DAPPIKLFLQ TRSVENEESS TSTVSKQAKL KQTTHLPFLW KTVAHFLFWV LLWSLYVLIL CALSLNKYGG LEEMFKRTYG
301: FILSIEDLSP NIGVFWYFFA EVFDFFRNFF LIVLHVNILF MLLPLAIRLK HRPCFLAFIY LAISSILKSY PSVGDSALYL SLWALFVNEL LDMKFSFFLF
401: CGYLGISLLS PVMHNLWIWR GTGNANFYFG NAIGYACFQI VFVVESVSAM LNHDRALKRS NSNHREVKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)