AT4G00560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.908 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 7761 Blast hits to 7761 proteins in 1842 species: Archae - 350; Bacteria - 5037; Metazoa - 116; Fungi - 124; Plants - 45; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:240798..242267 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36153.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||
| Length | 327 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKKTKVLIV GGTGYLGQHL LQAFAGNYGG ECELYDVAFT HHSSPLPARL LDAFPHSPAF PVDLKSGLGL NSISQDFRQP DVVVNCAALS VPRACEQDPD 101: SAMSINVPTS LVNWLSSFET NKTLLIHLST DQVYQGVKSF YKEEDETVAV NVYGKSKVAA ELLIKDKCQS FAILRSSIIF GPQTVSPLPK TLPIQWIDSS 201: LKKGDTVDFF HDEFRCPIYV KDLVNITFKL IDRWVSDDKQ MRLVLNAGGP ERLSRVQMAQ MVAEVRGYDL SLIKHVSASS IDRGVVSPAD ISMDITKLIH 301: TLELSPTSFK EGVRLTLDSE SHSHMLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)