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AT1G63120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHOMBOID-like 2
Curator
Summary (TAIR10)
AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.
Computational
Description (TAIR10)
RHOMBOID-like 2 (RBL2); CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 6 (TAIR:AT1G12750.3); Has 6856 Blast hits to 6855 proteins in 1947 species: Archae - 152; Bacteria - 4411; Metazoa - 521; Fungi - 179; Plants - 374; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-166-MONOMEREC:3.4.21.105eggNOG:COG0705eggNOG:KOG2289
EMBL:AB195671EMBL:AC010795EMBL:BT004076EMBL:BT005121
EMBL:CP002684EnsemblPlants:AT1G63120EnsemblPlants:AT1G63120.1entrez:842616
Gene3D:1.20.1540.10GeneID:842616Genevisible:Q9CAN1GO:GO:0000139
GO:GO:0004252GO:GO:0005794GO:GO:0009506GO:GO:0016021
GO:GO:0016485Gramene:AT1G63120.1hmmpanther:PTHR22936hmmpanther:PTHR22936:SF35
HOGENOM:HOG000239666InParanoid:Q9CAN1IntAct:Q9CAN1InterPro:IPR002610
InterPro:IPR022764KEGG:ath:AT1G63120MEROPS:S54.015OMA:CKWCHYL
PANTHER:PTHR22936PaxDb:Q9CAN1Pfam:PF01694PhylomeDB:Q9CAN1
PIR:F96656PRIDE:Q9CAN1PRO:PR:Q9CAN1ProteinModelPortal:Q9CAN1
Proteomes:UP000006548RefSeq:NP_176500.1STRING:3702.AT1G63120.1SUPFAM:SSF144091
TAIR:AT1G63120tair10-symbols:ATRBL2tair10-symbols:RBL2TMHMM:TMhelix
UniGene:At.43734UniProt:Q9CAN1
Coordinates (TAIR10) chr1:-:23409054..23410725
Molecular Weight (calculated) 35414.80 Da
IEP (calculated) 9.68
GRAVY (calculated) 0.39
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)