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AT5G60020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : laccase 17
Curator
Summary (TAIR10)
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational
Description (TAIR10)
laccase 17 (LAC17); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 2 (TAIR:AT2G29130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G60020-MONOMERBioCyc:MetaCyc:AT5G60020-MONOMEREC:1.10.3.2eggNOG:COG2132
eggNOG:KOG1263EMBL:AB015475EMBL:BT015359EMBL:BT015890
EMBL:CP002688EnsemblPlants:AT5G60020EnsemblPlants:AT5G60020.1entrez:836124
Gene3D:2.60.40.420GeneID:836124Genevisible:Q9FJD5GO:GO:0005507
GO:GO:0009698GO:GO:0009809GO:GO:0016491GO:GO:0016722
GO:GO:0046274GO:GO:0048046GO:GO:0052716Gramene:AT5G60020.1
hmmpanther:PTHR11709hmmpanther:PTHR11709:SF66HOGENOM:HOG000241916InParanoid:Q9FJD5
InterPro:IPR001117InterPro:IPR002355InterPro:IPR008972InterPro:IPR011706
InterPro:IPR011707InterPro:IPR017761InterPro:IPR033138KEGG:ath:AT5G60020
KO:K05909OMA:HYTLEIKPaxDb:Q9FJD5Pfam:PF00394
Pfam:PF07731Pfam:PF07732Pfam:Q9FJD5PhylomeDB:Q9FJD5
PRIDE:Q9FJD5PRO:PR:Q9FJD5PROSITE:PS00079PROSITE:PS00080
ProteinModelPortal:Q9FJD5Proteomes:UP000006548RefSeq:NP_200810.1scanprosite:PS00079
scanprosite:PS00080SMR:Q9FJD5STRING:3702.AT5G60020.1SUPFAM:SSF49503
TAIR:AT5G60020tair10-symbols:ATLAC17tair10-symbols:LAC17TIGRfam:TIGR03389
TIGRFAMs:TIGR03389UniGene:At.7684UniProt:Q9FJD5
Coordinates (TAIR10) chr5:+:24168072..24170223
Molecular Weight (calculated) 63961.90 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.15
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQLLLAVF SCVLLLPQPA FGITRHYTLE IKMQNVTRLC HTKSLVSVNG QFPGPKLIAR EGDQVLIKVV NQVPNNISLH WHGIRQLRSG WADGPAYITQ
101: CPIQTGQSYV YNYTIVGQRG TLWYHAHISW LRSTVYGPLI ILPKRGVPYP FAKPHKEVPM IFGEWFNADT EAIIRQATQT GGGPNVSDAY TINGLPGPLY
201: NCSAKDTFRL RVKPGKTYLL RLINAALNDE LFFSIANHTV TVVEADAIYV KPFETETILI APGQTTNVLL KTKSSYPSAS FFMTARPYVT GQGTFDNSTV
301: AGILEYEPPK QTKGAHSRTS IKNLQLFKPI LPALNDTNFA TKFSNKLRSL NSKNFPANVP LNVDRKFFFT VGLGTNPCNH KNNQTCQGPT NTTMFAASIS
401: NISFTMPTKA LLQSHYSGQS HGVYSPKFPW SPIVPFNYTG TPPNNTMVSN GTNLMVLPYN TSVELVMQDT SILGAESHPL HLHGFNFFVV GQGFGNFDPN
501: KDPRNFNLVD PIERNTVGVP SGGWAAIRFL ADNPGVWFMH CHLEVHTSWG LRMAWLVLDG DKPDQKLLPP PADLPKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)