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AT2G38080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Laccase/Diphenol oxidase family protein
Curator
Summary (TAIR10)
Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational
Description (TAIR10)
IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38080-MONOMERBioCyc:MetaCyc:AT2G38080-MONOMEREC:1.10.3.2eggNOG:COG2132
eggNOG:KOG1263EMBL:AC003028EMBL:AY052669EMBL:AY063730
EMBL:AY065187EMBL:AY114636EMBL:CP002685EnsemblPlants:AT2G38080
EnsemblPlants:AT2G38080.1entrez:818386Gene3D:2.60.40.420GeneID:818386
Genevisible:O80434GO:GO:0005507GO:GO:0009809GO:GO:0009834
GO:GO:0016491GO:GO:0016722GO:GO:0046274GO:GO:0048046
GO:GO:0052716Gramene:AT2G38080.1hmmpanther:PTHR11709hmmpanther:PTHR11709:SF93
HOGENOM:HOG000241916InParanoid:O80434InterPro:IPR001117InterPro:IPR002355
InterPro:IPR008972InterPro:IPR011706InterPro:IPR011707InterPro:IPR017761
InterPro:IPR033138KEGG:ath:AT2G38080KO:K05909OMA:IANNFTN
PaxDb:O80434Pfam:O80434Pfam:PF00394Pfam:PF07731
Pfam:PF07732PhylomeDB:O80434PIR:T01240PRIDE:O80434
PRO:PR:O80434PROSITE:PS00079PROSITE:PS00080ProteinModelPortal:O80434
Proteomes:UP000006548RefSeq:NP_565881.1scanprosite:PS00079scanprosite:PS00080
SMR:O80434STRING:3702.AT2G38080.1SUPFAM:SSF49503TAIR:AT2G38080
tair10-symbols:ATLMCO4tair10-symbols:IRX12tair10-symbols:LAC4tair10-symbols:LMCO4
TIGRfam:TIGR03389TIGRFAMs:TIGR03389UniGene:At.12454UniProt:O80434
Coordinates (TAIR10) chr2:+:15934540..15937352
Molecular Weight (calculated) 61530.00 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.07
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSHMVWFLF LVSFFSVFPA PSESMVRHYK FNVVMKNVTR LCSSKPTVTV NGRYPGPTIY AREDDTLLIK VVNHVKYNVS IHWHGVRQVR TGWADGPAYI
101: TQCPIQPGQV YTYNYTLTGQ RGTLWWHAHI LWLRATVYGA LVILPKRGVP YPFPKPDNEK VIVLGEWWKS DTENIINEAL KSGLAPNVSD SHMINGHPGP
201: VRNCPSQGYK LSVENGKTYL LRLVNAALNE ELFFKVAGHI FTVVEVDAVY VKPFKTDTVL IAPGQTTNVL LTASKSAGKY LVTASPFMDA PIAVDNVTAT
301: ATVHYSGTLS SSPTILTLPP PQNATSIANN FTNSLRSLNS KKYPALVPTT IDHHLFFTVG LGLNACPTCK AGNGSRVVAS INNVTFIMPK TALLPAHYFN
401: TSGVFTTDFP KNPPHVFNYS GGSVTNMATE TGTRLYKLPY NATVQLVLQD TGVIAPENHP VHLHGFNFFE VGRGLGNFNS TKDPKNFNLV DPVERNTIGV
501: PSGGWVVIRF RADNPGVWFM HCHLEVHTTW GLKMAFLVEN GKGPNQSILP PPKDLPKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)