AT5G60720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT2G39690.1); Has 703 Blast hits to 670 proteins in 103 species: Archae - 4; Bacteria - 66; Metazoa - 40; Fungi - 4; Plants - 482; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24418436..24422177 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77819.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||
| Length | 691 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSHSSSVNLL HYHYLPPDFN HSFRLCLTAP SSSRWSSPDD YCSILAMPTT TLPGSISPFN VPHSVRTKKP NGQQKKEEIE KEVWMLREML DQEEKTREIL 101: EQVQKHQLPS SSSSLTLPAS LPPKMKELIT ELSIVEGEIS RLEIQISHLQ INLKQEQDET LKQATTSSSR RAWQTSETYK DDNINPYQAP TLPKYPKLPP 201: PSPMVNKGMM KSENNNTKST TSHHQENATF GTKTLHFINK AIKGDYAIES FRKSNEKVGV VEKENHRSVQ HENKVQENMK MKKIRTMKSP SPLREPRYTS 301: PNKPNKDRVA ALDASLDIPP KSLSSTILME DGQNIQKWHP NKLAENIMKC LNFIYVRLLR TTRVMELEKT GPISRSTNFS LSSRSFRVDN ATSSLSKSMN 401: LVSYKESRQQ DPYGIFDVES SLARDIGPYK NLVIFTSSSM DSKCISSSSS VSLIQKLRVL MNNLETVDLK VLSHQQKLAF WINMFNACVM HGYLQHGVPK 501: TAERLQSLVY NKATMNVGGK NISAHTIEHC ILRKSTSSTM TQDRHEEMII RKLYGVEATD PNITFALSCG TRSSPAVRIY TGEGVTTELE KSKLEYLQAS 601: LVVTAAKRIG LPELLLKHAT DFVVLTADGG TGEMEQLGSL VKWVCNQLPT SGSLRKSMVD CFKNPNSKAS SSSSAVEKIP YDFEFQYLLA I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)