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AT5G54690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.853
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : galacturonosyltransferase 12
Curator
Summary (TAIR10)
Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).
Computational
Description (TAIR10)
galacturonosyltransferase 12 (GAUT12); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 13 (TAIR:AT3G01040.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410IG83eggNOG:ENOG410Y9J4EMBL:KJ138638
EnsemblPlants:AT5G54690EnsemblPlants:AT5G54690.1entrez:835558ExpressionAtlas:W8QN47
Gene3D:3.90.550.10GeneID:835558GO:GO:0000139GO:GO:0016021
GO:GO:0045489GO:GO:0047262GO:GO:0071555Gramene:AT5G54690.1
gramene_pathway:2.4.1.43gramene_pathway:PWY-1061hmmpanther:PTHR32116hmmpanther:PTHR32116:SF24
InterPro:IPR002495InterPro:IPR029044InterPro:IPR029993KEGG:00051+2.4.1.-
KEGG:00512+2.4.1.-KEGG:00513+2.4.1.-KEGG:00514+2.4.1.-KEGG:00522+2.4.1.-
KEGG:00533+2.4.1.-KEGG:00540+2.4.1.-KEGG:00550+2.4.1.-KEGG:00561+2.4.1.-
KEGG:00563+2.4.1.-KEGG:00600+2.4.1.-KEGG:00601+2.4.1.-KEGG:00603+2.4.1.-
KEGG:00604+2.4.1.-KEGG:00906+2.4.1.-KEGG:00908+2.4.1.-KEGG:00941+2.4.1.-
KEGG:00942+2.4.1.-KEGG:00944+2.4.1.-KEGG:00945+2.4.1.-KEGG:00965+2.4.1.-
KEGG:ath:AT5G54690KO:K13648OMA:GLHHFDWPANTHER:PTHR32116
PaxDb:W8QN47Pfam:PF01501Pfam:Q9FH36PhylomeDB:W8QN47
ProteinModelPortal:W8QN47RefSeq:NP_200280.1SMR:W8QN47STRING:3702.AT5G54690.1
SUPFAM:SSF53448tair10-symbols:GAUT12tair10-symbols:IRX8tair10-symbols:LGT6
TMHMM:TMhelixUniGene:At.49177UniGene:At.9639UniPathway:UPA00845
UniProt:Q9FH36UniProt:W8QN47
Coordinates (TAIR10) chr5:-:22219435..22221769
Molecular Weight (calculated) 60883.80 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.14
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLHISPSLR HVTVVTGKGL REFIKVKVGS RRFSYQMVFY SLLFFTFLLR FVFVLSTVDT IDGDPSPCSS LACLGKRLKP KLLGRRVDSG NVPEAMYQVL
101: EQPLSEQELK GRSDIPQTLQ DFMSEVKRSK SDAREFAQKL KEMVTLMEQR TRTAKIQEYL YRHVASSSIP KQLHCLALKL ANEHSINAAA RLQLPEAELV
201: PMLVDNNYFH FVLASDNILA ASVVAKSLVQ NALRPHKIVL HIITDRKTYF PMQAWFSLHP LSPAIIEVKA LHHFDWLSKG KVPVLEAMEK DQRVRSQFRG
301: GSSVIVANNK ENPVVVAAKL QALSPKYNSL MNHIRIHLPE LFPSLNKVVF LDDDIVIQTD LSPLWDIDMN GKVNGAVETC RGEDKFVMSK KFKSYLNFSN
401: PTIAKNFNPE ECAWAYGMNV FDLAAWRRTN ISSTYYHWLD ENLKSDLSLW QLGTLPPGLI AFHGHVQTID PFWHMLGLGY QETTSYADAE SAAVVHFNGR
501: AKPWLDIAFP HLRPLWAKYL DSSDRFIKSC HIRAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)