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AT5G15630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curator
Summary (TAIR10)
Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.
Computational
Description (TAIR10)
IRREGULAR XYLEM 6 (IRX6); INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (TAIR:AT5G60920.1); Has 379 Blast hits to 368 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 379; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHWUeggNOG:ENOG410YAACEMBL:AL391144EMBL:BT014900
EMBL:BT020445EMBL:CP002688EnsemblPlants:AT5G15630EnsemblPlants:AT5G15630.1
entrez:831417GeneID:831417Genevisible:Q9LFW3GO:GO:0005774
GO:GO:0005886GO:GO:0009834GO:GO:0010215GO:GO:0016049
GO:GO:0031225Gramene:AT5G15630.1hmmpanther:PTHR31673hmmpanther:PTHR31673:SF2
HOGENOM:HOG000231433InParanoid:Q9LFW3InterPro:IPR006918KEGG:ath:AT5G15630
OMA:MVTMNNYPaxDb:Q9LFW3Pfam:PF04833Pfam:Q9LFW3
PhylomeDB:Q9LFW3PIR:T51392PIRSF:PIRSF038122PRIDE:Q9LFW3
PRO:PR:Q9LFW3ProDom:PD140986Proteomes:UP000006548RefSeq:NP_197067.2
STRING:3702.AT5G15630.1TAIR:AT5G15630tair10-symbols:COBL4tair10-symbols:IRX6
UniGene:At.31773UniProt:Q9LFW3
Coordinates (TAIR10) chr5:+:5084842..5086545
Molecular Weight (calculated) 48517.40 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.18
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)