AT2G37090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
IRREGULAR XYLEM 9 (IRX9); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G27600.2); Has 591 Blast hits to 584 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15587671..15589223 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40061.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSLERSKKK AQVWKKAVIH FSLCFVMGFF TGFAPAGKAS FFSNFETTSY TSTKSPIPPQ PFENATYTQH SLLNRTLINS QSQAPAPAES REAEGETRSL 101: SEKEDENQVK VTPRGLVIVV TPIITKDRYK NVLLRRMANT LRLVPPPLLW IVVEKHSDGE EKSSSTMLRK TGIMYRRIVF KEDFTSLESE LDHQRNLALR 201: HIEHHKLSGI VHFAGLNNIY DLDFFVKIRD IEVFGTWPMA LLSANRKRVV VEGPVCESSQ VLGWHLRKIN NETETKPPIH ISSFAFNSSI LWDPERWGRP 301: SSVEGTKQDS IKYVKQVVLE DDTKLKGLPA QDCSKIMLWR LKFPTRTRLS T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)