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AT3G50220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF579)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 252 Blast hits to 252 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:9502eggNOG:ENOG410II07eggNOG:ENOG410YAEWEMBL:AK221924
EMBL:AL132976EMBL:AY087437EMBL:CP002686EMBL:DQ446752
EMBL:DQ653142EnsemblPlants:AT3G50220EnsemblPlants:AT3G50220.1entrez:824184
GeneID:824184Genevisible:Q9SNE5GO:GO:0000139GO:GO:0005794
GO:GO:0009834GO:GO:0016021GO:GO:0045492Gramene:AT3G50220.1
hmmpanther:PTHR31444hmmpanther:PTHR31444:SF8HOGENOM:HOG000238795InParanoid:Q9SNE5
InterPro:IPR006514InterPro:IPR021148KEGG:ath:AT3G50220OMA:EAAGNEC
PaxDb:Q9SNE5Pfam:PF04669Pfam:Q9SNE5PhylomeDB:Q9SNE5
PIR:T45568PRO:PR:Q9SNE5ProteinModelPortal:Q9SNE5Proteomes:UP000006548
RefSeq:NP_190591.1STRING:3702.AT3G50220.1TAIR:AT3G50220TIGRfam:TIGR01627
TIGRFAMs:TIGR01627TMHMM:TMhelixUniGene:At.1419UniProt:Q9SNE5
Coordinates (TAIR10) chr3:-:18617672..18618640
Molecular Weight (calculated) 35808.50 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.21
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNGSGNTNT KLILLHPYIQ KQTSTTRLWL LAFVSFFTIV FLLTLLYTRD TIPSKNTSVA AAVAAVVTGG STPSASSPIS NSNLPTSAIN ALLHYASRSN
101: DSFHMSYGEM KSISDVLRRC APPCNLLVFG LTHETLLWKS LNHNGRTVFI EENRYYAAYF EEIHPEIDVF DVQYTTKAHE AGELVTAAKE AAGNECRPVQ
201: NLLFSDCKLG LNDLPNHVYD VDWDVIFVDG PRGDAHEGPG RMSSIFTAAV LARSKKGGTP KTHVFVHDYY RDVERLCGDE FLCRENLVES NDLLAHYVLD
301: KMDKNSTKFC NGRKKRSVSS LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)