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AT5G17420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22926318 (2012): Golgi trans-Golgi network
  • PMID:22926318 (2012): plasma membrane
  • PMID:12897249 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cellulose synthase family protein
Curator
Summary (TAIR10)
Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).
Computational
Description (TAIR10)
IRREGULAR XYLEM 3 (IRX3); FUNCTIONS IN: cellulose synthase activity; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, secondary cell wall biogenesis, rhamnogalacturonan I side chain metabolic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-2365BioGrid:16884BRENDA:2.4.1.12CAZy:GT2
EC:2.4.1.12eggNOG:COG1215eggNOG:ENOG410II8IEMBL:AF088917
EMBL:AF091713EMBL:AK220815EMBL:AL391142EMBL:AY139754
EMBL:BT004543EMBL:CP002688EnsemblPlants:AT5G17420EnsemblPlants:AT5G17420.1
entrez:831608EvolutionaryTrace:Q9SWW6ExpressionAtlas:Q9SWW6Gene3D:3.30.40.10
GeneID:831608Genevisible:Q9SWW6GO:GO:0005886GO:GO:0008270
GO:GO:0009507GO:GO:0009832GO:GO:0009834GO:GO:0010330
GO:GO:0010400GO:GO:0016021GO:GO:0016760GO:GO:0030244
Gramene:AT5G17420.1gramene_pathway:2.4.1.12gramene_pathway:PWY-1001gramene_plant_reactome:1119314
gramene_plant_reactome:6875373hmmpanther:PTHR13301hmmpanther:PTHR13301:SF59HOGENOM:HOG000241942
InParanoid:Q9SWW6IntAct:Q9SWW6InterPro:IPR001841InterPro:IPR005150
InterPro:IPR013083InterPro:IPR027934InterPro:IPR029044iPTMnet:Q9SWW6
KEGG:00500+2.4.1.12KEGG:ath:AT5G17420KO:K10999MINT:MINT-6950921
OMA:PLEGWIMPaxDb:Q9SWW6PDB:1WEOPDBsum:1WEO
Pfam:PF03552Pfam:PF14569Pfam:Q9SWW6Pfscan:PS50089
PhylomeDB:Q9SWW6PIR:T51579PRIDE:Q9SWW6PRO:PR:Q9SWW6
PROSITE:PS50089ProteinModelPortal:Q9SWW6Proteomes:UP000006548RefSeq:NP_197244.1
SMR:Q9SWW6STRING:3702.AT5G17420.1SUPFAM:SSF53448SUPFAM:SSF57850
TAIR:AT5G17420tair10-symbols:ATCESA7tair10-symbols:CESA7tair10-symbols:IRX3
tair10-symbols:MUR10TCDB:4.D.3.1.7TMHMM:TMhelixUniGene:At.25558
UniGene:At.71017UniPathway:UPA00695UniProt:Q9SWW6UniProt:W8PV01
Coordinates (TAIR10) chr5:-:5736859..5741407
Molecular Weight (calculated) 115804.00 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.20
Length 1026 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEASAGLVAG SHNRNELVVI HNHEEPKPLK NLDGQFCEIC GDQIGLTVEG DLFVACNECG FPACRPCYEY ERREGTQNCP QCKTRYKRLR GSPRVEGDED
0101: EEDIDDIEYE FNIEHEQDKH KHSAEAMLYG KMSYGRGPED DENGRFPPVI AGGHSGEFPV GGGYGNGEHG LHKRVHPYPS SEAGSEGGWR ERMDDWKLQH
0201: GNLGPEPDDD PEMGLIDEAR QPLSRKVPIA SSKINPYRMV IVARLVILAV FLRYRLLNPV HDALGLWLTS VICEIWFAVS WILDQFPKWF PIERETYLDR
0301: LSLRYEREGE PNMLAPVDVF VSTVDPLKEP PLVTSNTVLS ILAMDYPVEK ISCYVSDDGA SMLTFESLSE TAEFARKWVP FCKKFSIEPR APEMYFTLKV
0401: DYLQDKVHPT FVKERRAMKR EYEEFKVRIN AQVAKASKVP LEGWIMQDGT PWPGNNTKDH PGMIQVFLGH SGGFDVEGHE LPRLVYVSRE KRPGFQHHKK
0501: AGAMNALVRV AGVLTNAPFM LNLDCDHYVN NSKAVREAMC FLMDPQIGKK VCYVQFPQRF DGIDTNDRYA NRNTVFFDIN MKGLDGIQGP VYVGTGCVFK
0601: RQALYGYEPP KGPKRPKMIS CGCCPCFGRR RKNKKFSKND MNGDVAALGG AEGDKEHLMS EMNFEKTFGQ SSIFVTSTLM EEGGVPPSSS PAVLLKEAIH
0701: VISCGYEDKT EWGTELGWIY GSITEDILTG FKMHCRGWRS IYCMPKRPAF KGSAPINLSD RLNQVLRWAL GSVEIFFSRH SPLWYGYKGG KLKWLERFAY
0801: ANTTIYPFTS IPLLAYCILP AICLLTDKFI MPPISTFASL FFISLFMSII VTGILELRWS GVSIEEWWRN EQFWVIGGIS AHLFAVVQGL LKILAGIDTN
0901: FTVTSKATDD DDFGELYAFK WTTLLIPPTT VLIINIVGVV AGISDAINNG YQSWGPLFGK LFFSFWVIVH LYPFLKGLMG RQNRTPTIVV IWSVLLASIF
1001: SLLWVRIDPF VLKTKGPDTS KCGINC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)