AT3G18660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant glycogenin-like starch initiation protein 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plant glycogenin-like starch initiation protein 1 (PGSIP1); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 2 (TAIR:AT1G77130.1); Has 1355 Blast hits to 1348 proteins in 306 species: Archae - 0; Bacteria - 140; Metazoa - 259; Fungi - 278; Plants - 507; Viruses - 75; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6419211..6421959 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75647.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 655 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANSPAAPAP TTTTGGDSRR RLSASIEAIC KRRFRRNSKG GGRSDMVKPF NIINFSTQDK NSSCCCFTKF QIVKLLLFIL LSATLFTIIY SPEAYHHSLS 101: HSSSRRQDPR YFSDLDINWD DVTKTLENIE EGRTIGVLNF DSNEIQRWRE VSKSKDNGDE EKVVVLNLDY ADKNVTWDAL YPEWIDEEQE TEVPVCPNIP 201: NIKVPTRRLD LIVVKLPCRK EGNWSRDVGR LHLQLAAATV AASAKGFFRG HVFFVSRCFP IPNLFRCKDL VSRRGDVWLY KPNLDTLRDK LQLPVGSCEL 301: SLPLGIQDRP SLGNPKREAY ATILHSAHVY VCGAIAAAQS IRQSGSTRDL VILVDDNISG YHRSGLEAAG WQIRTIQRIR NPKAEKDAYN EWNYSKFRLW 401: QLTDYDKIIF IDADLLILRN IDFLFSMPEI SATGNNGTLF NSGVMVIEPC NCTFQLLMEH INEIESYNGG DQGYLNEVFT WWHRIPKHMN FLKHFWIGDE 501: DDAKRKKTEL FGAEPPVLYV LHYLGMKPWL CYRDYDCNFN SDIFVEFATD IAHRKWWMVH DAMPQELHQF CYLRSKQKAQ LEYDRRQAEA ANYADGHWKI 601: RVKDPRFKIC IDKLCNWKSM LRHWGESNWT DYESFVPTPP AITVDRRSSL PGHNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)