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AT3G55990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.525
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23659919 (2013): Golgi Golgi apparatus Golgi membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828)
Curator
Summary (TAIR10)
Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1); Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10081eggNOG:ENOG410IJPNeggNOG:ENOG410YA1REMBL:AK118662
EMBL:AL163832EMBL:CP002686EnsemblPlants:AT3G55990EnsemblPlants:AT3G55990.1
entrez:824765GeneID:824765GO:GO:0000139GO:GO:0005794
GO:GO:0009409GO:GO:0016021GO:GO:0016413GO:GO:0045492
GO:GO:0045893GO:GO:0050826GO:GO:1990538Gramene:AT3G55990.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF10HOGENOM:HOG000238066InParanoid:Q9LY46
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962InterPro:IPR029979
KEGG:ath:AT3G55990OMA:IFMYNEDPANTHER:PTHR32285PANTHER:PTHR32285:SF10
PaxDb:Q9LY46Pfam:PF13839Pfam:PF14416Pfam:Q9LY46
PhylomeDB:Q9LY46PIR:T49211PRIDE:Q9LY46PRO:PR:Q9LY46
ProteinModelPortal:Q9LY46Proteomes:UP000006548RefSeq:NP_191158.1STRING:3702.AT3G55990.1
TAIR:AT3G55990tair10-symbols:ESK1tair10-symbols:TBL29TMHMM:TMhelix
UniGene:At.43528UniProt:Q9LY46
Coordinates (TAIR10) chr3:+:20780410..20782931
Molecular Weight (calculated) 56698.30 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.44
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPWRRKFPL FETGVTMKQR KNSNLSIFVV VFSVFLFGIF MYNEDVKSIA EFPFSTSKPH DVHDEATPIT EITTLPVQES IKNSDPIQES IKNADSVQDS
101: VKDVAEPVQE EVSKTEEVKK IELFAATEDE EDVELPPEEC DLFTGEWVFD NETHPLYKED QCEFLTAQVT CMRNGRRDSL YQNWRWQPRD CSLPKFKAKL
201: LLEKLRNKRM MFVGDSLNRN QWESMVCLVQ SVVPPGRKSL NKTGSLSVFR VEDYNATVEF YWAPFLVESN SDDPNMHSIL NRIIMPESIE KHGVNWKGVD
301: FLVFNTYIWW MNTFAMKVLR GSFDKGDTEY EEIERPVAYR RVMRTWGDWV ERNIDPLRTT VFFASMSPLH IKSLDWENPD GIKCALETTP ILNMSMPFSV
401: GTDYRLFSVA ENVTHSLNVP VYFLNITKLS EYRKDAHTSV HTIRQGKMLT PEQQADPNTY ADCIHWCLPG LPDTWNEFLY TRIISRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)