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AT2G40320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 33
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 33 (TBL33); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 32 (TAIR:AT3G11030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKENeggNOG:ENOG410ZJIPEMBL:BT004282EMBL:CP002685
EnsemblPlants:AT2G40320EnsemblPlants:AT2G40320.1entrez:818625GO:GO:0005794
GO:GO:0016021GO:GO:0080191GO:GO:1990538Gramene:AT2G40320.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF62HOGENOM:HOG000238066InParanoid:F4IH21
InterPro:IPR025846InterPro:IPR026057iPTMnet:F4IH21KEGG:ath:AT2G40320
OMA:THTRSKDPANTHER:PTHR32285PaxDb:F4IH21Pfam:F4IH21
Pfam:PF13839Pfam:PF14416PRIDE:F4IH21PRO:PR:F4IH21
TAIR:AT2G40320tair10-symbols:TBL33TMHMM:TMhelixUniProt:F4IH21
Coordinates (TAIR10) chr2:+:16840330..16842139
Molecular Weight (calculated) 49321.20 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.42
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPSSPISLT SSSIARKARF SPYLFTLLAF ILFVSVLYGE DFMCIFGQLE PNFVLPPSRT PEKNKKSEKL AFAIGKTEES CDVFSGKWVR DEVSRPLYEE
101: WECPYIQPQL TCQEHGRPDK DYQFWRWQPN HCDLPSFNAS LMLETLRGKR MMYVGDSLNR GMFVSMICLL HRLIPEDQKS IKTNGSLTVF TAKEYNATIE
201: FYWAPFLLES NSDDAIVHRI SDRVVRKGSI NKHGRHWKGV DIIIFNTYLW WMTGLKMNIL QGSFDDKEKN IVEVSTEDAY RMGMKSMLRW VKNNMDRKKT
301: RVFFTSMSPT HAKGIDWGGE PGQNCYNQTT LIEDPSYWGS DCRKSIMKVI GEVFGRSKTP ITLLNITQMS NYRKDAHTSI YKKQWSPLTA EQLENPTSYA
401: DCVHWCLPGL QDTWNELLFA KLFYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)