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AT5G03170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan-protein 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan-protein 11 (FLA11); CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan-protein 12 (TAIR:AT5G60490.1); Has 965 Blast hits to 948 proteins in 162 species: Archae - 18; Bacteria - 233; Metazoa - 22; Fungi - 18; Plants - 634; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWWTeggNOG:ENOG410YFHZEMBL:AB005240EMBL:AF360183
EMBL:AL163002EMBL:AY039999EMBL:AY085388EMBL:CP002688
EnsemblPlants:AT5G03170EnsemblPlants:AT5G03170.1entrez:831914Gene3D:2.30.180.10
GeneID:831914Genevisible:Q8LEJ6GO:GO:0005886GO:GO:0009834
GO:GO:0031225Gramene:AT5G03170.1hmmpanther:PTHR32077hmmpanther:PTHR32077:SF7
HOGENOM:HOG000237523InParanoid:Q8LEJ6InterPro:IPR000782KEGG:ath:AT5G03170
OMA:QASDQINPaxDb:Q8LEJ6Pfam:PF02469Pfam:Q8LEJ6
Pfscan:PS50213PhylomeDB:Q8LEJ6PIR:T48338PRIDE:Q8LEJ6
PRO:PR:Q8LEJ6PROSITE:PS50213ProteinModelPortal:Q8LEJ6Proteomes:UP000006548
RefSeq:NP_195937.1SMART:SM00554SMR:Q8LEJ6STRING:3702.AT5G03170.1
SUPFAM:SSF82153TAIR:AT5G03170tair10-symbols:ATFLA11tair10-symbols:FLA11
TMHMM:TMhelixUniGene:At.27796UniGene:At.69706UniProt:Q8LEJ6
Coordinates (TAIR10) chr5:-:752898..753638
Molecular Weight (calculated) 25593.10 Da
IEP (calculated) 5.84
GRAVY (calculated) 0.05
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSRTFIFS NLFIFFLVIA TTYGQAPAPG PSGPTNITAI LEKAGQFTLF IRLLKSTQAS DQINTQLNSS SSNGLTVFAP TDNAFNSLKS GTLNSLSDQQ
101: KVQLVQFHVL PTLITMPQFQ TVSNPLRTQA GDGQNGKFPL NITSSGNQVN ITTGVVSATV ANSVYSDKQL AVYQVDQVLL PLAMFGSSVA PAPAPEKGGS
201: VSKGSASGGD DGGDSTDSSD AERTGFGFGI RITTVAAIAA SSSLWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)