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AT3G16920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.837
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chitinase-like protein 2
Curator
Summary (TAIR10)
Encodes a chitinase-like protein expressed predominantly in stems. Mutants accumulate ligning in etiolated hypocotyls.
Computational
Description (TAIR10)
chitinase-like protein 2 (CTL2); FUNCTIONS IN: chitinase activity; INVOLVED IN: lignin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT1G05850.1); Has 1961 Blast hits to 1960 proteins in 411 species: Archae - 0; Bacteria - 465; Metazoa - 25; Fungi - 3; Plants - 1425; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G16920-MONOMERCAZy:GH19eggNOG:COG3979eggNOG:KOG4742
EMBL:AB026636EMBL:AF412071EMBL:AK226317EMBL:AY090261
EMBL:CP002686EnsemblPlants:AT3G16920EnsemblPlants:AT3G16920.1entrez:820947
GeneID:820947Genevisible:Q9LSP9GO:GO:0005576GO:GO:0005975
GO:GO:0006032GO:GO:0016998Gramene:AT3G16920.1hmmpanther:PTHR22595
hmmpanther:PTHR22595:SF42HOGENOM:HOG000231411InterPro:IPR000726InterPro:IPR016283
InterPro:IPR023346KEGG:00520+3.2.1.14KEGG:ath:AT3G16920PaxDb:Q9LSP9
Pfam:PF00182Pfam:Q9LSP9PhylomeDB:Q9LSP9PIRSF:PIRSF001060
PRIDE:Q9LSP9PRO:PR:Q9LSP9ProteinModelPortal:Q9LSP9Proteomes:UP000006548
RefSeq:NP_188317.2SMR:Q9LSP9STRING:3702.AT3G16920.1SUPFAM:SSF53955
TAIR:AT3G16920tair10-symbols:ATCTL2tair10-symbols:CTL2TMHMM:TMhelix
UniGene:At.23422UniProt:Q9LSP9
Coordinates (TAIR10) chr3:-:5776663..5777886
Molecular Weight (calculated) 38448.30 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.36
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTLIDEEKD KKKSTMVSKP LFSLLLLTVA LVVFQTGTLV NAEDSEPSSS TRKPLVKIVK GKKLCDKGWE CKGWSEYCCN HTISDFFETY QFENLFSKRN
101: SPVAHAVGFW DYRSFITAAA EYQPLGFGTA GEKLQGMKEV AAFLGHVGSK TSCGYGVATG GPLAWGLCYN KEMSPDQLYC DDYYKLTYPC TPGVSYHGRG
201: ALPVYWNYNY GQTGEALKVD LLSHPEYLEN NATLAFQAAI WRWMTPPKKH LPSAHDVFVG KWKPTKNDTA AKRTPGFGAT INVLYGDQIC NSGFDNDEMN
301: NIVSHYLYYL DLIGVGREEA GPHEKLSCAD QEPFSSSSSA PPSSGSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)