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AT3G11660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NDR1/HIN1-like 1
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.
Computational
Description (TAIR10)
NDR1/HIN1-like 1 (NHL1); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G52470.1); Has 917 Blast hits to 917 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 917; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8XKeggNOG:ENOG41119PUEMBL:AC009918EMBL:AF264697
EMBL:AY088586EMBL:BT020319EMBL:BT020551EMBL:CP002686
EnsemblPlants:AT3G11660EnsemblPlants:AT3G11660.1entrez:820338GeneID:820338
GO:GO:0004871GO:GO:0007165GO:GO:0009506GO:GO:0016021
GO:GO:0046658GO:GO:0051607Gramene:AT3G11660.1hmmpanther:PTHR31415
hmmpanther:PTHR31415:SF2InterPro:IPR004864KEGG:ath:AT3G11660OMA:SNFQITL
Pfam:PF03168PhylomeDB:Q9SRN0Proteomes:UP000006548RefSeq:NP_566396.1
STRING:3702.AT3G11660.1TAIR:AT3G11660tair10-symbols:NHL1TMHMM:TMhelix
UniGene:At.15768UniGene:At.37608UniGene:At.71596UniProt:Q9SRN0
Coordinates (TAIR10) chr3:-:3679031..3679660
Molecular Weight (calculated) 23665.60 Da
IEP (calculated) 10.02
GRAVY (calculated) 0.05
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)