AT1G50610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G20190.1); Has 85511 Blast hits to 59788 proteins in 2042 species: Archae - 60; Bacteria - 3568; Metazoa - 17158; Fungi - 3134; Plants - 54121; Viruses - 151; Other Eukaryotes - 7319 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18742171..18744501 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76865.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 686 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNWEDPFTL ACNTALKKNL PSCIFIIIFI SVLCPVAMSQ VVVPDSDADC LLRFKDTLAN GSEFRSWDPL SSPCQGNTAN WFGVLCSNYV WGLQLEGMGL 101: TGKLNLDPLV PMKNLRTISF MNNNFNGPMP QVKRFTSLKS LYLSNNRFSG EIPADAFLGM PLLKKILLAN NAFRGTIPSS LASLPMLLEL RLNGNQFQGQ 201: IPSFQQKDLK LASFENNDLD GPIPESLRNM DPGSFAGNKG LCDAPLSPCS SSSPGVPVVP VSPVDPKSTS PPTGKKAGSF YTLAIILIVI GIILVIIALV 301: FCFVQSRRRN FLSAYPSSAG KERIESYNYH QSTNKNNKPA ESVNHTRRGS MPDPGGRLLF VRDDIQRFDL QDLLRASAEV LGSGTFGASY KAAISSGQTL 401: VVKRYKHMNN VGRDEFHEHM RRLGRLNHPN ILPLVAYYYR REEKLLVTEF MPNSSLASHL HANNSAGLDW ITRLKIIKGV AKGLSYLFDE LPTLTIPHGH 501: MKSSNIVLDD SFEPLLTDYA LRPMMSSEHA HNFMTAYKSP EYRPSKGQII TKKTDVWCFG VLILEVLTGR FPENYLTQGY DSNMSLVTWV NDMVKEKKTG 601: DVFDKEMKGK KNCKAEMINL LKIGLRCCEE EEERRMDMRE VVEMVEMLRE GESEDDFGSM DHRGTHNNVY SSMLLDDDDF GFSMNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)