AT4G29180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : root hair specific 16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
root hair specific 16 (RHS16); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G29450.1); Has 136747 Blast hits to 120807 proteins in 4421 species: Archae - 131; Bacteria - 13766; Metazoa - 43367; Fungi - 9914; Plants - 51055; Viruses - 402; Other Eukaryotes - 18112 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14385631..14389524 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101577.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 911 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAHSVFLIL FSVIAIAIVV HGQGQAGFIS IDCGSPPNIN YVDTDTGISY TWDAPFINAG VNLNVSEEYG YPKNPVLPFP LADVRSFPQG NRNCYTLTPS 101: DGKGNLYLIR ASFMYGNYDG KNALPEFDLY VNVNFWTSVK LRNASENVIK EILSFAESDT IYVCLVNKGK GTPFISALEL RPMNSSIYGT EFGRNVSLVL 201: YQRWDTGYLN GTGRYQKDTY DRIWSPYSPV SWNTTMTTGY IDIFQSGYRP PDEVIKTAAS PKSDDEPLEL SWTSSDPDTR FYAYLYFAEL ENLKRNESRE 301: IKIFWNGSPV SGAFNPSPEY SMTVSNSRAF TGKDHWISVQ KTAESTRPPI LNAIEIFSAQ SLDEFYTRID DVQAIESIKS TYKVNKIWTG DPCSPRLFPW 401: EVLLMSLFLY FAARRNLSSS GLHGPIAFAF RNLSLLESLD LSNNNLKGIV PEFLADLKYL KSLNLKGNNL TGFIPRSLRK RATANGLALS VDEQNICHSR 501: SCRDGNRIMV PIVVSTLVII LIAALAIICI MRRESKIMYS GAYSGPLLPS GKRRFTYSEV SSITNNFNKV IGKGGFGIVY LGSLEDGTEI AVKMINDSSF 601: GKSKGSSSSS SSSQVSKEFQ VEAELLLTVH HRNLASFVGY CDDGRSMALI YEYMANGNLQ DYLSSENAED LSWEKRLHIA IDSAQGLEYL HHGCRPPIVH 701: RDVKTANILL NDNLEAKIAD FGLSKVFPED DLSHVVTAVM GTPGYVDPEY YNTFKLNEKS DVYSFGIVLL ELITGKRSIM KTDDGEKMNV VHYVEPFLKM 801: GDIDGVVDPR LHGDFSSNSA WKFVEVAMSC VRDRGTNRPN TNQIVSDLKQ CLAAELAREP KSNHEKKEVV KEKYTKTKST VQNYSSNEYN SSSGSVSLSF 901: GDYSTFGPMA R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)