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AT1G63450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.551
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root hair specific 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 8 (RHS8); FUNCTIONS IN: catalytic activity; LOCATED IN: membrane; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G41250.1); Has 717 Blast hits to 713 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
CAZy:GT47EC:2.4.1.-eggNOG:ENOG410XTFHeggNOG:KOG1021
EMBL:AC008047EMBL:AK230135EMBL:CP002684EMBL:KJ138954
EnsemblPlants:AT1G63450EnsemblPlants:AT1G63450.1entrez:842651GeneID:842651
Genevisible:Q9SH31GO:GO:0000271GO:GO:0005794GO:GO:0016021
GO:GO:0016757GO:GO:0042546GO:GO:0048767Gramene:AT1G63450.1
hmmpanther:PTHR11062hmmpanther:PTHR11062:SF47HOGENOM:HOG000239726InterPro:IPR004263
iPTMnet:Q9SH31KEGG:ath:AT1G63450OMA:FKNDAFGPaxDb:Q9SH31
Pfam:PF03016PhylomeDB:Q9SH31Proteomes:UP000006548RefSeq:NP_176534.2
STRING:3702.AT1G63450.1TAIR:AT1G63450tair10-symbols:RHS8TMHMM:TMhelix
UniGene:At.49999UniProt:Q9SH31
Coordinates (TAIR10) chr1:+:23532523..23534517
Molecular Weight (calculated) 76566.30 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.58
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSKHLQKL VHKRESKKQP NKKMPVSVSK LRRPRTSKKT ETGNPEKTLK DPRTCCNNLF SIFSARSFLY RVPLTILFLF LIYLWSTSTT VISGNVVHIC
101: ISSRKLTDLY CLTAGSQPAL RAPVNNFTAP ASEDVVTSKE EKNVFVLGKD GDKGFAENET FEGGKDSDKS TVGENLTINK NETFTGETSG ERVSILNQDA
201: KPIHEKNLDS VLDQDSLPKN EIDQDFIIDW DPETGEERYR YFKAKTEDEE TGLKSTEEYI QIQRTWLSMG NNRKKPGSCE GKGVYVYDLP SKFNKDLLRE
301: CSDMVPWADF CNYFKNDAFG ELMESMGKGW FRTHQYSLEP IFHSRILKHP CRVHNETQAK LFYVPFYGGM DVLRWHFKNV SSDVKDVLPI EIVKWLGSKK
401: SWRKNSGKDH VFVLGKISWD FRRVDKYSWG SSLLEMQEMK NPTKLLIERN PWEVNDIAIP HPTYFHPKTD TDIAIWQNKI LGKPRRSLIS FAGAARPGNP
501: ESIRSILIDQ CRSSPNQCRF LNCTDGGCDK SESVIELFRD SEFCLQPPGD SPTRKSIFDS LILGCIPVIF DPYSAYYQYT WHLPEDHRRY SVYINKEDVK
601: LKRVNVIEKL MSKTLRERED MRSYIVHELL PGLVYGDSNA KFERFRDAFD ITMDSLFKKI AKTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)