AT1G19900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glyoxal oxidase-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 833 Blast hits to 830 proteins in 167 species: Archae - 0; Bacteria - 311; Metazoa - 0; Fungi - 239; Plants - 262; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6907038..6908684 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61074.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.03 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAARATFIFY ALFLTTLQFL LTHHVSSAAR GLWKYIAPNV GISAMHMQLL HNDRVVMYDR TNFGPSNISL PNGNCRDNPQ DAVSKIDCTA HSIEYDVATN 101: TIRPLTVQSN TWCSSGSVRP DGVLVQTGGD RDGELKTRTF SPCNNNQCDW VEMNNGLKKR RWYASNHILP DGKQIVMGGQ GQFNYEFFPK TTNPNVVALP 201: FLAETHDQGQ ENNLYPFVFM NTDGNLFMFA NNRAILLDYV KNTVVKTFPA IPGGDPRNYP STGSAVLLPL KNLEADNVET EVLVCGGAPK GSYNLARKKT 301: FVKALDTCAR IKINDAKPEW AVEKMPHARV MGDMIPLPNG DVLLINGGSF GTAAWELGRT PVLAPDLYHP ENPVGSRFES LRPTTIPRMY HSAAILLRDG 401: RVLVGGSNPH AFYNYTGVLF PTELSLEAFS PVYLQREFSN LRPKIISPEP QSMIKYGTNL KLKFSVTGEV TTPAKVTMVF PTFTTHSFAM NQRVLVLDNV 501: KFTRKGKSPM YEVQVRTPRS ANIAWPGYYM IFVVNQDIPS EGVWVKLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)