AT5G49270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Involved in successfully establishing tip growth in root hairs. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SHAVEN 2 (SHV2); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein-7 precursor (TAIR:AT4G16120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19972021..19974398 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73139.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 663 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVLLPIFFG VLLLFTVTPP SMSQLPPTIM VPAPAPAPIS PSDLCNGIFL SYDFILGRKI PPNDTADQPY RFESVLTVLN NGREELKEWR VFVGFQHNEI 101: LISATDALIV NGTELPALVG NGTIFGGYPV SDLKTAIQTA GDLKQMTAEI ELVGTQFMVA PPAVPLPSNI SLVNEGWLCP VPTLQSKREL TTCCIRDASI 201: IVNTTITTKF LPRQPGDLTI MYDVIRAYDQ NYLTEVTMEN HNPLGRLDHW ELSFDWMRDE FIQKMQGAYP TVVDATKCIF GPQSLIYTGL DFADVLTCER 301: RPIIIDLPPT KKDDSTLGNI PSCCRNGTIL PRIMDPSKSV SVFTMQVAKM PPDFNRSALF PPQNWRIKGT LNPDYSCGPP VRVTPTFYPD PSGMPTNKSS 401: FASWQIVCNI TQAKTEIPKC CVSFSAFFND SIIPCNTCAC GCVSETRRTC SAETPSLLIP PDALLLPFEN RTALTLAWNA LKHKTLPNPM PCGDNCGVSI 501: NWHMASDYRG GWTVRITIFN WGEIDFPNWF LAVQMKKPAL LGFEKAYSFN ASLLSVDGGV NNTIFMEGLP GLDYLVAEAD EKDPKKKNIR IPGKQQSVIQ 601: FSKKLTPGIN VAERDGFPAK VIFNGEECLL PDLLPMASGG RRNGAITVLS FITFYVAAFM VLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)