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AT1G12560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A7
Curator
Summary (TAIR10)
Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.
Computational
Description (TAIR10)
expansin A7 (EXPA7); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A18 (TAIR:AT1G62980.1); Has 2192 Blast hits to 2189 proteins in 166 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 53; Plants - 2083; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG4QeggNOG:ENOG410Y9MBEMBL:AC025416EMBL:AC025417
EMBL:CP002684EnsemblPlants:AT1G12560EnsemblPlants:AT1G12560.1entrez:837813
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:837813Genevisible:Q9LN94
GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
GO:GO:0048767Gramene:AT1G12560.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF2
HOGENOM:HOG000220793InParanoid:Q9LN94InterPro:IPR002963InterPro:IPR007112
InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT1G12560
OMA:PAFMKMAPaxDb:Q9LN94Pfam:PF01357Pfam:PF03330
Pfam:Q9LN94Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9LN94
PIR:F86259PRIDE:Q9LN94PRINTS:PR01225PRINTS:PR01226
PRO:PR:Q9LN94PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9LN94
Proteomes:UP000006548RefSeq:NP_172717.1SMART:SM00837SMR:Q9LN94
STRING:3702.AT1G12560.1SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT1G12560
tair10-symbols:ATEXP7tair10-symbols:ATEXPA7tair10-symbols:ATHEXP ALPHA 1.26tair10-symbols:EXP7
tair10-symbols:EXPA7TMHMM:TMhelixUniGene:At.42070UniProt:Q9LN94
Coordinates (TAIR10) chr1:+:4276557..4277693
Molecular Weight (calculated) 28792.90 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.17
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)