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AT1G48930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23173056 (2012): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glycosyl hydrolase 9C1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase 9C1 (GH9C1); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1873 Blast hits to 1853 proteins in 259 species: Archae - 2; Bacteria - 684; Metazoa - 175; Fungi - 17; Plants - 924; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48930-MONOMERCAZy:CBM49CAZy:GH9EC:3.2.1.4
eggNOG:ENOG410IDXWeggNOG:ENOG410XPC9EMBL:AC016041EMBL:BT002935
EMBL:BT005638EMBL:CP002684EnsemblPlants:AT1G48930EnsemblPlants:AT1G48930.1
entrez:841315Gene3D:1.50.10.10GeneID:841315Genevisible:Q9M995
GO:GO:0005576GO:GO:0008810GO:GO:0030245GO:GO:0030246
GO:GO:0071555Gramene:AT1G48930.1gramene_pathway:3.2.1.4gramene_pathway:PWY-1001
hmmpanther:PTHR22298hmmpanther:PTHR22298:SF41HOGENOM:HOG000021033InParanoid:Q9M995
InterPro:IPR001701InterPro:IPR008928InterPro:IPR012341InterPro:IPR018221
InterPro:IPR019028KEGG:00500+3.2.1.4KEGG:ath:AT1G48930OMA:ACACLQK
PaxDb:Q9M995Pfam:PF00759Pfam:PF09478Pfam:Q9M995
PhylomeDB:Q9M995PIR:B96527PRIDE:Q9M995PRO:PR:Q9M995
PROSITE:PS00592ProteinModelPortal:Q9M995Proteomes:UP000006548RefSeq:NP_175323.1
scanprosite:PS00592SMART:SM01063SMR:Q9M995STRING:3702.AT1G48930.1
SUPFAM:SSF48208TAIR:AT1G48930tair10-symbols:AtGH9C1tair10-symbols:GH9C1
TMHMM:TMhelixUniGene:At.16674UniProt:Q9M995
Coordinates (TAIR10) chr1:-:18101782..18104587
Molecular Weight (calculated) 69083.20 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.38
Length 627 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)