AT5G35190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:13434181..13435167 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 37124.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||
| Length | 328 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERVHCMVYV VVLSAIAATV TAYPYSSHQT PQYNSPVHKH ESSYSPKKYS PYYSASPLPP LQYRRQGPKY TPHPKPYLFN SPPPPYYSPS PKEDYKSPPP 101: PYVYNSPPPP YYSPSPKVDY KSPPPPYVYN SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP YYSLSPKVDY KSPPPPYVYN SPPPPYYSPS PKVDYKFSPP 201: PYVYNSPSPP YYSPSPKVDY KSPPPPYVYN SPPPPYFSPS PKVDYKSPPP PYVYSSPPPP PYYSPSPEVS YKSPPPPPYY SPSLEVSYKS PPPLFVYNFP 301: PPPPFYSPSP KVSYKSPPAP YVSKTPNY |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)