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AT5G57540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 13
Curator
Summary (TAIR10)
Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 13 (XTH13); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity; INVOLVED IN: xyloglucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 12 (TAIR:AT5G57530.1); Has 2225 Blast hits to 2203 proteins in 306 species: Archae - 0; Bacteria - 288; Metazoa - 0; Fungi - 452; Plants - 1385; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57540-MONOMERBRENDA:2.4.1.207CAZy:GH16EC:2.4.1.207
eggNOG:COG2273eggNOG:ENOG410IFD4EMBL:AB011482EMBL:CP002688
EnsemblPlants:AT5G57540EnsemblPlants:AT5G57540.1entrez:835858Gene3D:2.60.120.200
GeneID:835858Genevisible:Q9FKL8GO:GO:0004553GO:GO:0005618
GO:GO:0010411GO:GO:0016762GO:GO:0042546GO:GO:0048046
GO:GO:0071555GO:GO:0080039Gramene:AT5G57540.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF20HOGENOM:HOG000236368InParanoid:Q9FKL8InterPro:IPR000757
InterPro:IPR008263InterPro:IPR008264InterPro:IPR010713InterPro:IPR013320
InterPro:IPR016455KEGG:ath:AT5G57540KO:K08235OMA:MISAFCI
PaxDb:Q9FKL8Pfam:PF00722Pfam:PF06955Pfam:Q9FKL8
Pfscan:PS51762PhylomeDB:Q9FKL8PIRSF:PIRSF005604PRIDE:Q9FKL8
PRINTS:PR00737PRO:PR:Q9FKL8PROSITE:PS01034PROSITE:PS51762
ProteinModelPortal:Q9FKL8Proteomes:UP000006548RefSeq:NP_200562.1scanprosite:PS01034
SMR:Q9FKL8STRING:3702.AT5G57540.1SUPFAM:SSF49899TAIR:AT5G57540
tair10-symbols:AtXTH13tair10-symbols:XTH13UniGene:At.55604UniProt:Q9FKL8
Coordinates (TAIR10) chr5:-:23302996..23304049
Molecular Weight (calculated) 32177.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.25
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFTTKQSL LLLSLLLLIS LSAGSFYDNF DITWGNGRAN IVESGQLLTC TLDKISGSGF QSKKEYLFGK IDMKMKLVAG NSAGTVTAYY LSSKGETWDE
101: IDFEFLGNVT GQPYVLHTNV FTGGKGNREM QFYLWFDPTA DFHTYTVLWN PLNIIFLVDG IPIRVFKNNE ANGVAYPKSQ PMKIYSSLWE ADDWATQGGK
201: VKTDWTNAPF SASYKSFNDV DCCSRTSLLN WVTCNANSNS WMWTTLNSNQ YGQMKWVQDD YMIYNYCTDF KRFPQGLPTE CNLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)