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AT2G20520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan 6
Curator
Summary (TAIR10)
fasciclin-like arabinogalactan-protein 6 (Fla6)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan 6 (FLA6); CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinoogalactan 9 (TAIR:AT1G03870.1); Has 1085 Blast hits to 1063 proteins in 208 species: Archae - 14; Bacteria - 391; Metazoa - 4; Fungi - 7; Plants - 614; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY37eggNOG:ENOG410YJJEEMBL:AC007109EMBL:AF333972
EMBL:CP002685EnsemblPlants:AT2G20520EnsemblPlants:AT2G20520.1entrez:816574
Gene3D:2.30.180.10GeneID:816574Genevisible:Q9SIL7GO:GO:0005886
GO:GO:0031225Gramene:AT2G20520.1hmmpanther:PTHR32077hmmpanther:PTHR32077:SF6
HOGENOM:HOG000237523InParanoid:Q9SIL7InterPro:IPR000782KEGG:ath:AT2G20520
OMA:HVLPKYYPaxDb:Q9SIL7Pfam:PF02469Pfam:Q9SIL7
Pfscan:PS50213PhylomeDB:Q9SIL7PIR:C84590PRIDE:Q9SIL7
PRO:PR:Q9SIL7PROSITE:PS50213ProteinModelPortal:Q9SIL7Proteomes:UP000006548
RefSeq:NP_565475.1SMART:SM00554SMR:Q9SIL7STRING:3702.AT2G20520.1
SUPFAM:SSF82153TAIR:AT2G20520tair10-symbols:FLA6TMHMM:TMhelix
UniGene:At.24766UniProt:Q9SIL7
Coordinates (TAIR10) chr2:+:8840663..8841406
Molecular Weight (calculated) 26507.60 Da
IEP (calculated) 5.62
GRAVY (calculated) 0.11
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSLFSYVV LLIFLFTIPY IQSQPTAPAP TTEKSPINLT AILEAGHQFT TLIQLLNTTQ VGFQVSVQLN SSDQGMTIFA PTDNAFNKLK PGTLNSLTYQ
101: QQIQLMLYHI IPKYYSLSDL LLASNPVRTQ ATGQDGGVFG LNFTGQAQSN QVNVSTGVVE TRINNALRQQ FPLAVYVVDS VLLPEELFGT KTTPTGAPAP
201: KSSTSSSDAD SPAADDEHKS AGSSVKRTSL GIVVSFALFC CSVIYIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)