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AT4G13390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT5G06640.1); Has 154812 Blast hits to 45323 proteins in 1720 species: Archae - 310; Bacteria - 21282; Metazoa - 59302; Fungi - 26683; Plants - 23217; Viruses - 3952; Other Eukaryotes - 20066 (source: NCBI BLink).
Protein Annotations
EMBL:AL049608EMBL:AL161536EMBL:CP002687EnsemblPlants:AT4G13390
EnsemblPlants:AT4G13390.1entrez:826970GeneID:826970GO:GO:0005199
GO:GO:0009664GO:GO:0016021Gramene:AT4G13390.1InterPro:IPR006706
KEGG:ath:AT4G13390OMA:DYPKPQPPfam:PF04554PIR:T06296
Proteomes:UP000006548RefSeq:NP_193075.1STRING:3702.AT4G13390.1TAIR:AT4G13390
TMHMM:TMhelixUniGene:At.33379UniProt:Q9T0L0
Coordinates (TAIR10) chr4:+:7783856..7785145
Molecular Weight (calculated) 48314.80 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.91
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MISLRMKGLG HCLVYVVVFS VIAAIVTAYD SPSSTPQYTS PYPPKNYSPY LSESPPPPPP QYRRQEPKYT PHPEPNVYDS PTPLPYYFPF PKLDIKSPPP
101: PSVYTFSPPQ LYYSPSPKVE YKSPPPPYVY SSLPPLTYYS PSPKVIYNSP PPPYIYSSPP PPPYYSPSPK VDYKSPPPPY VYSSPPPPPY YSPSPKVEYK
201: SPPPPYVYSF PPPPPYYSPS PKVGYKSPPA PYVYSSPPPP PYYSPSPKVN YKSPPPPYVY SSPPPPPYSP SPKVEFKSPP PPYIYNSPPP PSYYSPSPKI
301: DYKSPPPPYV YSSPPPPTYY SPSPRVDYKS PPPPYVYNSL PPPYVYNSPP PPPYYSPSPT VNYKSPPPPY VYNSPPPPPY YSPFPKVEYK SPPPPYIYNS
401: PPPPPYYSPS PKITYKSPPP PYIYKTPYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)