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AT1G12040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : leucine-rich repeat/extensin 1
Curator
Summary (TAIR10)
encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.
Computational
Description (TAIR10)
leucine-rich repeat/extensin 1 (LRX1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat/extensin 2 (TAIR:AT1G62440.1); Has 373279 Blast hits to 102116 proteins in 2982 species: Archae - 793; Bacteria - 62996; Metazoa - 122212; Fungi - 47201; Plants - 91548; Viruses - 7950; Other Eukaryotes - 40579 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHYJeggNOG:ENOG411157WEMBL:AC002131EMBL:AY026364
EMBL:CP002684EnsemblPlants:AT1G12040EnsemblPlants:AT1G12040.1entrez:837756
Gene3D:3.80.10.10GeneID:837756Genevisible:O65375GO:GO:0000904
GO:GO:0005199GO:GO:0005576GO:GO:0009505GO:GO:0009506
GO:GO:0009826GO:GO:0010054GO:GO:0071555Gramene:AT1G12040.1
hmmpanther:PTHR32093hmmpanther:PTHR32093:SF40InParanoid:O65375InterPro:IPR013210
InterPro:IPR032675KEGG:ath:AT1G12040OMA:YNEFEGKPaxDb:O65375
Pfam:O65375Pfam:PF08263PIR:E86255PRIDE:O65375
PRO:PR:O65375ProteinModelPortal:O65375Proteomes:UP000006548RefSeq:NP_172668.1
SMR:O65375STRING:3702.AT1G12040.1SUPFAM:SSF52058TAIR:AT1G12040
tair10-symbols:LRX1UniGene:At.10625UniProt:O65375
Coordinates (TAIR10) chr1:+:4070160..4072394
Molecular Weight (calculated) 80997.30 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.42
Length 744 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFPPLRSLF LFTLLLSSVC FLQIKADHDD ESDLGSDIKV DKRLKFENPK LRQAYIALQS WKKAIFSDPF NFTANWNGSD VCSYNGIYCA PSPSYPKTRV
101: VAGIDLNHAD MAGYLASELG LLSDLALFHI NSNRFCGEVP LTFNRMKLLY ELDLSNNRFV GKFPKVVLSL PSLKFLDLRY NEFEGKIPSK LFDRELDAIF
201: LNHNRFRFGI PKNMGNSPVS ALVLADNNLG GCIPGSIGQM GKTLNELILS NDNLTGCLPP QIGNLKKVTV FDITSNRLQG PLPSSVGNMK SLEELHVANN
301: AFTGVIPPSI CQLSNLENFT YSSNYFSGRP PICAASLLAD IVVNGTMNCI TGLARQRSDK QCSSLLARPV DCSKFGCYNI FSPPPPTFKM SPEVRTLPPP
401: IYVYSSPPPP PSSKMSPTVR AYSPPPPPSS KMSPSVRAYS PPPPPYSKMS PSVRAYPPPP PPSPSPPPPY VYSSPPPPYV YSSPPPPPYV YSSPPPPPYV
501: YSSPPPPYVY SSPPPPYVYS SPPPPPPSPP PPCPESSPPP PVVYYAPVTQ SPPPPSPVYY PPVTQSPPPP SPVYYPPVTN SPPPPSPVYY PPVTYSPPPP
601: SPVYYPQVTP SPPPPSPLYY PPVTPSPPPP SPVYYPPVTP SPPPPSPVYY PPVTPSPPPP SPVYYPSETQ SPPPPTEYYY SPSQSPPPTK ACKEGHPPQA
701: TPSYEPPPEY SYSSSPPPPS PTSYFPPMPS VSYDASPPPP PSYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)