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AT1G23720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.921
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 541802 Blast hits to 61860 proteins in 2130 species: Archae - 1218; Bacteria - 96253; Metazoa - 194950; Fungi - 87318; Plants - 78001; Viruses - 13090; Other Eukaryotes - 70972 (source: NCBI BLink).
Protein Annotations
EMBL:AC005990EMBL:CP002684EnsemblPlants:AT1G23720EnsemblPlants:AT1G23720.1
entrez:838982GeneID:838982GO:GO:0005199GO:GO:0009664
Gramene:AT1G23720.1InterPro:IPR006706KEGG:ath:AT1G23720OMA:SPKPSYK
Pfam:PF04554PIR:C86371Proteomes:UP000006548RefSeq:NP_173784.1
STRING:3702.AT1G23720.1TAIR:AT1G23720UniGene:At.41527UniProt:Q9ZUC3
Coordinates (TAIR10) chr1:+:8388655..8391342
Molecular Weight (calculated) 99667.30 Da
IEP (calculated) 9.67
GRAVY (calculated) -1.16
Length 895 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAASYEPYT YSSPPPPLYD SPTPKVDYKS PPPPYVYSSP PPPLSYSPSP KVDYKSPPPP YVYSSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPYYSPSP
101: KVDYKSPPPP YVYSSPPPPY YSPSPKPTYK SPPPPYVYNS PPPPYYSPSP KVEYKSPPPP YVYSSPPPPY YSPSPKVDYK SPPPPYVYNS PPPPYYSPSP
201: KPTYKSPPPP YIYSSPPPPY YSPSPKPVYK SPPPPYVYSS PPPPYYSPSP KPAYKSPPPP YVYSSPPPPY YSPSPKPIYK SPPPPYVYNS PPPPYYSPSP
301: KPAYKSPPPP YVYSFPPPPY YSPSPKPVYK SPPPPYVYNS PPPPYYSPSP KPAYKSPPPP YVYSSPPPPY YSPSPKPTYK SPPPPYVYSS PPPPYYSPSP
401: KPVYKSPPPP YIYNSPPPPY YSPSPKPSYK SPPPPYVYSS PPPPYYSPSP KLTYKSSPPP YVYSSPPPPY YSPSPKVVYK SPPPPYVYSS PPPPYYSPSP
501: KPSYKSPPPP YVYNSPPPPY YSPSPKVIYK SPPHPHVCVC PPPPPCYSHS PKIEYKSPPT PYVYHSPPPP PYYSPSPKPA YKSSPPPYVY SSPPPPYYSP
601: APKPVYKSPP PPYVYNSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP TPKPTYKSPP PPYVYSSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPYYSP
701: APKPTYKSPP PPYVYSSPPP PYYSPSPKPT YKSPPPPYVY SSPPPPPYYS PSPKVEYKSP PPPYVYSSPP PPYYSPSPKV EYKSPPPPYV YSSPPPPPYY
801: SPSPKVEYKS PPPPYVYSSP PPPTYYSPSP KVEYKSPPPP YVYNSPPPPA YYSPSPKIEY KSPPPPYVYS SPPPPSYSPS PKAEYKSPPP PSLYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)