AT3G28550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 433536 Blast hits to 44790 proteins in 1795 species: Archae - 956; Bacteria - 66952; Metazoa - 162710; Fungi - 67978; Plants - 67619; Viruses - 11578; Other Eukaryotes - 55743 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10700873..10703929 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 113140.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
| Length | 1018 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGPSAHLVYA IGVIIMATMV AAYEPYTDSS PPPYSVPLPK VEYKSPPLPD VYSSPPPPLE YSPAPKVDYK SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP 0101: YYSPSPKVDY KSPPPPYVYS SPPPPIYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVEY KSPPSPYVYN SPPPSYYSPS PKVDYKSPPP PYVYSSPPPP 0201: YYSPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKIVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP 0301: YYSPSPKVVY KSPPPPYVYS SPPPPYYSPT PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKIVYKSPPP PYVYSSPPPP 0401: YYTPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP 0501: YYSPSPKVLY KSPPPPYVYS SPPPPYYSPS PKVVYKSPPP PYVYSSPPPP YYSPSPKVVY KSPPPPYVYS SPPPPYYSPS PKVVYKSPPP PYVYSSPPPP 0601: YYSPSPKVYY KSPPSPYHAP SPKVLYKSPP HPHVCVCPPP PPCYSPSPKV VYKSSPPPYV YSSPPPPYHS PSPKVHYKSP PPPYVYSSPP PPYYSPSPKV 0701: HYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV VYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV 0801: VYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV VYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPSPKV 0901: DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPAPKV DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYYSPSPK VDYKSPPPPY 1001: VYSSPPPPSY SPSPKTEY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)