AT3G54590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a hydroxyproline-rich glycoprotein. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein (HRGP1); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G54580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20206223..20208472 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78096.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||||||||||
| Length | 699 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSSSKMGPS AHLISALGVI IMATMVAAYE PETYASPPPL YSSPLPEVEY KTPPLPYVDS SPPPTYTPAP EVEYKSPPPP YVYSSPPPPT YSPSPKVDYK 101: SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYNSPPPPY YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP KVEYKSPPPP YVYSSPPPPY YSPSPKVDYK 201: SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYSSPPPPY YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYSSPPPPY YSPSPKVDYK 301: SPPPPYVYSS PPPPTYSPSP KVDYKSPPPP YVYSSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPTYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK 401: SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVHYK 501: SPPPPYVYSS PPPPYYSPSP KVHYKSPPPP YVYNSPPPPY YSPSPKVYYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK 601: SPPPPYYSPS PKVYYKSPPH PHVCVCPPPP PCYSPSPKVV YKSPPPPYVY NSPPPPYYSP SPKVYYKSPP PPSYYSPSPK VEYKSPPPPS YSPSPKTEY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)