AT5G06630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, hypocotyl, male gametophyte, root, leaf; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT2G24980.1); Has 160752 Blast hits to 32037 proteins in 1417 species: Archae - 314; Bacteria - 21521; Metazoa - 60648; Fungi - 26708; Plants - 25391; Viruses - 3854; Other Eukaryotes - 22316 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2036502..2037824 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 49837.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||
| Length | 440 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSSRTMGLM NCMVYVVVLS AIAATVTSYP YSSPHTPAYD SPSYEHKGPK YAPHPKPYVY SSPPPPYYTP SPKVNYKSPP PPYVYNSPPP PYYSPSPKVY 101: YKSPPPPYVY SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP LYYSPSPKVY YKSPPPPYVY SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPKVY 201: YKSPPPPYVY SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPKVY YKSPPPPYVY SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPKVY 301: YKSPPPPYVY SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPNVY YKSPPPPYVY SSPPPPYYSP SPKVHYKSPP PPYVYSSPPP PYYSPSPKVH 401: YKSPPPPYVY SSPPPPYYSP SPKVTYKSPP PPYVYKTPYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)