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AT5G06640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: shoot apex, hypocotyl, sepal, root, leaf; EXPRESSED DURING: 4 anthesis, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AP002543EMBL:CP002688EnsemblPlants:AT5G06640EnsemblPlants:AT5G06640.1
entrez:830552GeneID:830552GO:GO:0005199GO:GO:0009664
Gramene:AT5G06640.1HOGENOM:HOG000152449InterPro:IPR006706KEGG:ath:AT5G06640
OMA:AVANHPPPfam:PF04554Proteomes:UP000006548RefSeq:NP_196282.1
STRING:3702.AT5G06640.1TAIR:AT5G06640TMHMM:TMhelixUniGene:At.32829
UniProt:Q9FG06
Coordinates (TAIR10) chr5:-:2039859..2041928
Molecular Weight (calculated) 77510.70 Da
IEP (calculated) 9.67
GRAVY (calculated) -1.07
Length 689 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKYNIKPKQ INKNKEMGMM RSSRTMGLGH CMVYVVVLSA IAATVTSYPY SSPYSSPQTP HYNSPSHEHK SPKYAPHPKP YVYISPPPPS YYSPSPKVNY
101: KSPPPPNVYN SPPPPYYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP YYSPSPKIEY
201: KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYNSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYFSPS PKVEYKSPPP PYVYNSPPPP YYSPSPKVEY
301: KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYSSPPPQ YYSPSPKVAY
401: KSPPPPYVYS SPPPPYYSPS PKVAYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVEYKSPPP PYVYSSPPPP YYSPSPKVEY
501: KSPPPPYVYS SPPPPYHSPS PKVNYKSPPP PYVYSSHPPP YYSPSPKVNY KSPPPPYVYS SPPPPYYSPS PKVNYKSPPP PYVYSSPPPP YYSPSPMVDY
601: KSTPPPYVYS FPPLPYYSPS PKVDYKSPPL PYVYSSPPPL YYSPSPKVHY KSPPPPYVYN SPPPPYYSPS PKVTYKSPPP PYVYKAPYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)