AT3G54580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G28550.1); Has 478331 Blast hits to 51256 proteins in 1906 species: Archae - 1077; Bacteria - 77248; Metazoa - 176231; Fungi - 77872; Plants - 71303; Viruses - 12471; Other Eukaryotes - 62129 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20200927..20203782 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 105736.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||
| Length | 951 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGPSTHLICA LGVVIMATMV AAYDPYTDSS PPPLYSSPLP KIEYKTPPLP YIDSSPPPTY SPAPEVEYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY 101: VYSSPPPPTY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY 201: VYSSPPPPYY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VDYKSPPPPY VYSSPPPPYY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VDYKSPPPPY 301: VYSSPPPPYY SPSPKVDYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY 401: VYSSPPPPTY SPSPKVEYKS PPPPYVYSSP PPPYYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVDYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY 501: VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY YSPSPKVYYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY 601: HSPSPKVQYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPHP HVCVCPPPPP 701: CYSPSPKVVY KSPPPPYVYS SPPPPHYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVHY KSPPPPYYAP TPKVHYKSPP PPYVYSSPPP PYYSPSPKVH 801: YKSPPPPYVY SSPPPPYYSP SPKVEYKSPP PPYVYSSPPP PYYSPSPKVD YKSPPPPYVY SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPSPVVD 901: YKSPPPPYVY SSPPPPYYSP SPKVEYKSPP PPYVYKSPPP PSYSPSPKTE Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)