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AT4G28850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 26 (XTH26); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 16 (TAIR:AT3G23730.1); Has 2230 Blast hits to 2210 proteins in 325 species: Archae - 0; Bacteria - 312; Metazoa - 0; Fungi - 457; Plants - 1370; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28850-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410IEDWEMBL:AK230242EMBL:AL035353EMBL:AL161573
EMBL:CP002687EnsemblPlants:AT4G28850EnsemblPlants:AT4G28850.1entrez:829006
Gene3D:2.60.120.200GeneID:829006Genevisible:Q9SVV2GO:GO:0004553
GO:GO:0005618GO:GO:0010411GO:GO:0016762GO:GO:0042546
GO:GO:0048046GO:GO:0071555Gramene:AT4G28850.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF55HOGENOM:HOG000236368InParanoid:Q9SVV2InterPro:IPR000757
InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT4G28850KO:K08235OMA:FVEADFSPaxDb:Q9SVV2
Pfam:PF00722Pfam:PF06955Pfam:Q9SVV2Pfscan:PS51762
PhylomeDB:Q9SVV2PIR:T04514PIRSF:PIRSF005604PRIDE:Q9SVV2
PRO:PR:Q9SVV2PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q9SVV2
Proteomes:UP000006548RefSeq:NP_194614.1scanprosite:PS01034SMR:Q9SVV2
STRING:3702.AT4G28850.1SUPFAM:SSF49899TAIR:AT4G28850tair10-symbols:ATXTH26
tair10-symbols:XTH26UniGene:At.50378UniProt:Q9SVV2
Coordinates (TAIR10) chr4:+:14244336..14245781
Molecular Weight (calculated) 32925.30 Da
IEP (calculated) 9.91
GRAVY (calculated) -0.31
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLQAKTLM FVLAAALATL GRTFVEADFS KNFIVTWGKD HMFMNGTNLR LVLDKSAGSA IKSKVAHLFG SVEMLIKLVP GNSAGTVAAY YLSSTGSTHD
101: EIDFEFLGNA TGQPYTIHTN LYAQGKGNRE QQFRPWFNPT NGFHNYTIHW NPSEVVWFVD GTPIRVFRNY ESEGIAYPNK QGMKVFASLW NAEDWATQGG
201: RVKTNWTLAP FVAEGRRYKA RACLWKGSVS IKQCVDPTIR SNWWTSPSFS QLTASQLTKM QKIRDGFMIY DYCKDTNRFK GVMPPECSKK QF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)