AT5G15890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRICHOME BIREFRINGENCE-LIKE 21 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRICHOME BIREFRINGENCE-LIKE 21 (TBL21); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 19 (TAIR:AT5G15900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5187687..5189348 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59869.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELPLFAILQ RTPRVAITLA FVLFVLTIVP ALYTLLADPI LPPSISSFET DHTRLSHLNS SSNQIPSPVN GSIPTPPYHT PSKHRKSSFH RIPKPKKGPI 101: SSPTDHIPLR QRSSSFDQIP SPMNSPVPAP PHRNSSADQS PSPVNGPIPA PLNHTSLRHL NSSSDDHSSP VTTSPSRTRI RDDEQMCDLF TGEWVPNEEA 201: PYYTNTTCWA IHEHQNCMKY GRPDTGFMRW RWKPESCDLP IFDPQEFLEM VRGKAMGFVG DSISRNQVQS LLCLLSRVEY PEDISPSPDT DFKVWNYTSY 301: NFTLHVMWSP FLVKATKPDP KSNFFSLYLD EYDTKWTSQL DQLDYLVISS GHWFSRPVIF YENQQISGCQ YCALPNTTEL PLTYGYRKAL RISLKAIIEN 401: FKGLAFLRSF SPQHFEGGAW NEGGDCVRTQ PYRRNETIPE ADLKVHDIQR EEFRAAEEDG MKKSGLRLKL MDTTQAMLLR PDGHPGRYGH LQNPNVTLRN 501: DCIHWCLPGP IDTLNDILLQ MMKTDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)