AT1G72460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G42880.1); Has 91468 Blast hits to 66265 proteins in 3076 species: Archae - 82; Bacteria - 9673; Metazoa - 18100; Fungi - 2635; Plants - 53448; Viruses - 168; Other Eukaryotes - 7362 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27279510..27281533 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70797.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVAWLIWPI VLSLTALSAN SITESESLLK FKKSLNNTKS LDSWTPESEP CGASQRWIGL LCNKNSVFGL QIEQMGLSGK VDVAPLKDLP SLRTISIMNN 101: SFSGDIPEFN RLTALKSLYI SGNRFSGNIP SDYFETMVSL KKAWLSNNHF SGLIPISLAT TLPNLIELRL ENNQFIGSIP NFTQTTLAIV DLSNNQLTGE 201: IPPGLLKFDA KTFAGNSGLC GAKLSTPCPQ PKNSTASITI EGTMKDANKS KYFLAFSTLG VLLIVVLVSL AFRKKKKKRR RKKARRTSEQ DNSDDQQIQV 301: TVEGSNSSRQ SRSSRSGELN KGVAGTSDLV MVNKEKGVFR LSDLMKAAAH VLGNPGGGSN RPRSSGGVGS AYKAVLSNGV TVVVKRVTVM NQVSVDVFDK 401: EIRKLGSLQH KNVLTPLAYH FRQDEKLLVF EFVPNLNLLH RLHGDHEEFQ LDWPSRLKII QGIARGMWYL HRELGFLNLP HGNLKSSNIF LAEDGEPLIS 501: EFGLQKLINP DAQSQSLVAF KSPEADRDGT VSAKSDVFSF GVVVLEILTG KFPSQYAGLN RAGGANLVEW LGSALEQGGW MDLLHPMVVT AAAEDKIMEE 601: EIENVLRIGV RCTREDPDQR PNMTEVVDEL TIEDSNDDFI TIET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)