suba logo
AT4G29450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.860
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: root hair specific 16 (TAIR:AT4G29180.2); Has 136974 Blast hits to 122023 proteins in 4538 species: Archae - 125; Bacteria - 13867; Metazoa - 43814; Fungi - 10104; Plants - 50658; Viruses - 384; Other Eukaryotes - 18022 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29450-MONOMEReggNOG:COG0515eggNOG:ENOG410IF1SEMBL:AL161575
EMBL:CP002687EMBL:DQ446880EMBL:FJ708758EnsemblPlants:AT4G29450
EnsemblPlants:AT4G29450.1entrez:829066Gene3D:3.80.10.10GeneID:829066
GO:GO:0004674GO:GO:0005524GO:GO:0016021Gramene:AT4G29450.1
hmmpanther:PTHR27003hmmpanther:PTHR27003:SF44InterPro:IPR000719InterPro:IPR001245
InterPro:IPR008271InterPro:IPR011009InterPro:IPR017441InterPro:IPR024788
InterPro:IPR032675KEGG:ath:AT4G29450OMA:RRWDIGYPfam:PF07714
Pfam:PF12819Pfscan:PS50011PhylomeDB:Q9M0D8PIR:F85343
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548
RefSeq:NP_194674.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q9M0D8STRING:3702.AT4G29450.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT4G29450TMHMM:TMhelixUniGene:At.54544UniProt:Q9M0D8
Coordinates (TAIR10) chr4:-:14478837..14482626
Molecular Weight (calculated) 96562.70 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.19
Length 863 amino acids
Sequence (TAIR10)
(BLAST)
001: MRANLVFGIF CALVTTILVH GQDQSGYISI DCGIPPYDTP EDTMTNINYV SDEAFITTGV NFKVSEEYGY PKNPVLLSTL AEVRAFPQGN RNCYTLKLSQ
101: GKDHLYLIRA SFMYGNYDGK KALPEFDLYV NVNFWSTVKF KNASDQVTKE ILSFAESDTI YVCLVNKGKG TPFISGLELR PVNSSIYGTE FGRNVSLVLY
201: RRWDIGYLNG TGRYQDDRFD RIWSPYSSNI SWNSIITSGY IDVFQNGYCP PDEVIKTAAA PENVDDPLEL FWTSDDPNVR FYAYLYFAEL ETLEKNETRK
301: IKILWNGSPV SETSFEPSSK YSTTFSNPRA FTGKDHWISI QKTVDSTLPP ILNAIEIFTA QSLDEFSTTI EDIHAIESIK ATYKVNKVWS GDPCSPRLFP
401: WEGVGCSDNN NNHQIKSLNL SSSGLLGPIV LAFRNLSLLE SLDLSNNDLQ QNVPEFLADL KHLKVLNLKG NNFTGFIPKS LMKKLKAGLL TLSADEQNLC
501: NSCQEKKKKK SMVVPIAVAA SVIVLVVVLV IIWIILRQRK KGAYSGPLLP SGKRRFTYNE VSSITNNFNK VIGKGGFGIV YLGSLEDGTK IAVKMINDSS
601: LAKPKGTSSS SLSRASNQFQ VEAELLLTVH HRNLASFVGY CDDDRSMALI YEYMANGNLQ AYLSSENAED LSWEKRLHIA IDSAQGLEYL HDGCRPAIVH
701: RDVKTANILI NDNLEAKIAD FGLSKVFPED DLSHVVTTVM GTPGYVDPEY YRTFVLNEKS DVYSFGVVLL ELITGQRAII KTEEGDNISV IHYVWPFFEA
801: RELDGVVDPL LRGDFSQDSA WKFVDVAMSC VRDKGSNRPT MNQIVAELKQ CLAAELDREP QSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)