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AT3G56950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16223486
SwissProt : endoplasmic reticulum 16381842
TAIR : endoplasmic reticulum 16223486
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30963359 (2019): endoplasmic reticulum
  • PMID:16223486 (2005): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : small and basic intrinsic protein 2;1
Curator
Summary (TAIR10)
One of the Major Intrinsic Proteins(MIPs) which facilitate the passive transport of small molecules across membranes.Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER.
Computational
Description (TAIR10)
small and basic intrinsic protein 2;1 (SIP2;1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: Aquaporin-like superfamily protein (TAIR:AT5G18290.2); Has 1253 Blast hits to 1253 proteins in 361 species: Archae - 9; Bacteria - 357; Metazoa - 222; Fungi - 102; Plants - 511; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
BioGrid:10178eggNOG:COG0580eggNOG:KOG0223EMBL:AF387020
EMBL:AL138655EMBL:AY087153EMBL:BT006280EMBL:CP002686
EnsemblPlants:AT3G56950EnsemblPlants:AT3G56950.1entrez:824862ExpressionAtlas:Q9M1K3
Gene3D:1.20.1080.10GeneID:824862Genevisible:Q9M1K3GO:GO:0005215
GO:GO:0005789GO:GO:0016021hmmpanther:PTHR19139hmmpanther:PTHR19139:SF128
HOGENOM:HOG000240015InParanoid:Q9M1K3IntAct:Q9M1K3InterPro:IPR000425
InterPro:IPR023271PANTHER:PTHR19139PaxDb:Q9M1K3Pfam:PF00230
Pfam:Q9M1K3PhylomeDB:Q9M1K3PIR:T47755PRIDE:Q9M1K3
PRINTS:PR00783PRO:PR:Q9M1K3ProteinModelPortal:Q9M1K3Proteomes:UP000006548
RefSeq:NP_191254.1STRING:3702.AT3G56950.2SUPFAM:SSF81338TAIR:AT3G56950
tair10-symbols:SIP2tair10-symbols:SIP2;1TMHMM:TMhelixUniGene:At.48778
UniGene:At.70999UniGene:At.74195UniProt:Q9M1K3
Coordinates (TAIR10) chr3:-:21078586..21079644
Molecular Weight (calculated) 25946.50 Da
IEP (calculated) 10.13
GRAVY (calculated) 0.67
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)