suba logo
AT3G27890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:21311031 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADPH:quinone oxidoreductase
Curator
Summary (TAIR10)
Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay.
Computational
Description (TAIR10)
NADPH:quinone oxidoreductase (NQR); FUNCTIONS IN: FMN reductase activity; INVOLVED IN: response to salt stress, defense response to bacterium; LOCATED IN: chloroplast stroma, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NADPH-dependent FMN reductase (InterPro:IPR005025); Has 4868 Blast hits to 4868 proteins in 1478 species: Archae - 69; Bacteria - 4415; Metazoa - 6; Fungi - 46; Plants - 72; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G27890-MONOMERBRENDA:1.6.5.3EC:1.6.5.2eggNOG:COG0431
eggNOG:KOG4530EMBL:AF145234EMBL:AP000371EMBL:BT024581
EMBL:CP002686EnsemblPlants:AT3G27890EnsemblPlants:AT3G27890.1entrez:822411
ExpressionAtlas:Q9LK88Gene3D:3.40.50.360GeneID:822411Genevisible:Q9LK88
GO:GO:0003955GO:GO:0005829GO:GO:0005886GO:GO:0009507
GO:GO:0009570GO:GO:0009651GO:GO:0009735GO:GO:0042742
Gramene:AT3G27890.1hmmpanther:PTHR30543hmmpanther:PTHR30543:SF2HOGENOM:HOG000263119
InParanoid:Q9LK88InterPro:IPR005025InterPro:IPR029039KEGG:ath:AT3G27890
OMA:NKPEFTLPaxDb:Q2HIK0PaxDb:Q9LK88Pfam:PF03358
Pfam:Q9LK88PhylomeDB:Q9LK88PRIDE:Q2HIK0PRIDE:Q9LK88
PRO:PR:Q9LK88ProteinModelPortal:Q9LK88Proteomes:UP000006548RefSeq:NP_189427.1
SMR:Q2HIK0SMR:Q9LK88STRING:3702.AT3G27890.1SUPFAM:SSF52218
TAIR:AT3G27890tair10-symbols:NQRUniGene:At.5735UniProt:Q2HIK0
UniProt:Q9LK88
Coordinates (TAIR10) chr3:-:10350807..10351938
Molecular Weight (calculated) 21557.00 Da
IEP (calculated) 7.77
GRAVY (calculated) -0.03
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAVTAIKPL IRVAALSGSL RKTSFHTGLL RAAIDLTKES VPGLQIEYID ISPLPLINTD LEVNGTYPPV VEAFRQKILE ADSILFASPE YNFSVSAPLK
101: NALDWASRPP NVWADKPAAI ISTGGGFGGG RSQYHLRQIG VFLDLHFINK PEFTLNAFQP PQKFDAEGNL VDEVTKERLK QVLLSLQAFT LRLQGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)