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AT3G25540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18643979 (2008): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Curator
Summary (TAIR10)
LAG1 homolog 1
Computational
Description (TAIR10)
LONGEVITY ASSURANCE GENE 1 (LAG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1255 Blast hits to 1255 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 304; Plants - 188; Viruses - 3; Other Eukaryotes - 169 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5058eggNOG:KOG1607EMBL:AB025639EMBL:AF198179
EMBL:AF360152EMBL:AY142597EMBL:CP002686EnsemblPlants:AT3G25540
EnsemblPlants:AT3G25540.1entrez:822140GeneID:822140Genevisible:Q9LDF2
GO:GO:0005783GO:GO:0005789GO:GO:0005794GO:GO:0005886
GO:GO:0016021GO:GO:0042761GO:GO:0046513GO:GO:0050291
Gramene:AT3G25540.1hmmpanther:PTHR12560hmmpanther:PTHR12560:SF13HOGENOM:HOG000239939
InParanoid:Q9LDF2InterPro:IPR006634InterPro:IPR016439iPTMnet:Q9LDF2
KEGG:ath:AT3G25540OMA:HHITTLVPANTHER:PTHR12560PaxDb:Q9LDF2
Pfam:PF03798Pfam:Q9LDF2Pfscan:PS50922PhylomeDB:Q9LDF2
PIRSF:PIRSF005225PRIDE:Q9LDF2PRO:PR:Q9LDF2PROSITE:PS50922
ProteinModelPortal:Q9LDF2Proteomes:UP000006548Reactome:R-ATH-1660661RefSeq:NP_566769.1
SMART:SM00724STRING:3702.AT3G25540.1TAIR:AT3G25540tair10-symbols:LAG1
TMHMM:TMhelixUniGene:At.6098UniProt:Q9LDF2
Coordinates (TAIR10) chr3:+:9274752..9276261
Molecular Weight (calculated) 36499.40 Da
IEP (calculated) 7.58
GRAVY (calculated) 0.16
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLFESVKSI DWEQESFPTY QDLGFLPLFA VFFPTIRFLL DRFVFEKLAS LVIYGRMSTN KSDNIKDRKK NSPKVRKFKE SAWKCIYYLS AELLALSVTY
101: NEPWFSNTLY FWIGPGDQIW PDQPMKMKLK FLYMFAAGFY TYSIFALVFW ETRRSDFGVS MGHHITTLVL IVLSYICRLT RAGSVILALH DASDVFLEIG
201: KMSKYCGAES LASISFVLFA LSWVVLRLIY YPFWILWSTS YQIIMTVDKE KHPNGPILYY MFNTLLYFLL VLHIFWWVLI YRMLVKQVQD RGKLSEDVRS
301: DSESDDEHED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)