AT1G13580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LAG1 longevity assurance homolog 3 | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LAG1 longevity assurance homolog 3 (LAG13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT3G25540.1); Has 1229 Blast hits to 1229 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 587; Fungi - 304; Plants - 168; Viruses - 3; Other Eukaryotes - 167 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4645380..4646765 | ||||||||||||
| Molecular Weight (calculated) | 28198.50 Da | ||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||
| Length | 239 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLLESVKSI NWEHESSPVY QDFRVLPLFA VFFPSIRFLL DRFVFEKLAK YLIYGKHRQD MGDDTTERKK KIRKFKESAW KCVYYLSAEI LALSVTYNEP 101: WFMNTKYFWV GPGDQTWPDQ QTKLKLKLLY MFVAGFYTYS IFALVFWETR RSDFGVSMGH HIATLILIVL SYVCSFSRVG SVVLALHDAS DVFLEVGKMS 201: KYSGAERIAS FSFILFVLSW IILRLIYYPF WILWSTRFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)