AT1G06470.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.890 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Nucleotide/sugar transporter family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1); Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6; Bacteria - 116; Metazoa - 574; Fungi - 390; Plants - 969; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:1970726..1973540 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 46454.60 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.36 | ||||||||||||||||||||||||||||||||||||||||
Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEQRVQLRVG TMETISNEGD VDREQVLETF GIENETGKET NGSRSFDVGY SSGDTLETLP KASKVDISPA DVLKTLFFIL VWYTFSTFLT LYNKTLLGDD 101: LGKFPAPLLM NTIHFSIQAV LSKMITWYWS GRFQPDVTIS WRDYFVRVVP TALGTAMDIN LSNESLVFIS VTFATMCKSA APIFLLLFAF AFRLESPSLK 201: LFGIISVISA GVLLTVAKET EFEFWGFVFV MLAAVMSGFR WCMTQVLLQK ETFGLKNPFI FMSCVAPVMA IATGLLSLLL DPWSEFRDNK YFDSGAHFAR 301: TCFLMLFGGA LAFCMVLTEY VLVSVTSAVT VTIAGVVKEA VTIVVAVFYF HDEFTWLKGV GLMIIMVGVS LFNWYKYDKL QKGHKTEEEK QLQAPSQTGK 401: YVILDEMDDQ ENSP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)