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AT1G06470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.890
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide/sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide/sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1); Has 2283 Blast hits to 2278 proteins in 296 species: Archae - 6; Bacteria - 116; Metazoa - 574; Fungi - 390; Plants - 969; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0697eggNOG:KOG1443EMBL:AC007592EMBL:BT000433
EMBL:BT003372EMBL:CP002684EnsemblPlants:AT1G06470EnsemblPlants:AT1G06470.1
EnsemblPlants:AT1G06470.2entrez:837159GeneID:837159Genevisible:Q8H184
GO:GO:0008643GO:GO:0016021Gramene:AT1G06470.1Gramene:AT1G06470.2
hmmpanther:PTHR11132hmmpanther:PTHR11132:SF121HOGENOM:HOG000070506InParanoid:Q8H184
InterPro:IPR004853KEGG:ath:AT1G06470KO:K15280OMA:FARTCFL
PaxDb:Q8H184Pfam:PF03151Pfam:Q8H184PhylomeDB:Q8H184
PIR:E86200PRIDE:Q8H184PRO:PR:Q8H184ProteinModelPortal:Q8H184
Proteomes:UP000006548RefSeq:NP_172135.2RefSeq:NP_973772.1STRING:3702.AT1G06470.1
TAIR:AT1G06470TMHMM:TMhelixUniGene:At.42340UniProt:Q8H184
Coordinates (TAIR10) chr1:+:1970726..1973540
Molecular Weight (calculated) 46454.60 Da
IEP (calculated) 4.73
GRAVY (calculated) 0.36
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQRVQLRVG TMETISNEGD VDREQVLETF GIENETGKET NGSRSFDVGY SSGDTLETLP KASKVDISPA DVLKTLFFIL VWYTFSTFLT LYNKTLLGDD
101: LGKFPAPLLM NTIHFSIQAV LSKMITWYWS GRFQPDVTIS WRDYFVRVVP TALGTAMDIN LSNESLVFIS VTFATMCKSA APIFLLLFAF AFRLESPSLK
201: LFGIISVISA GVLLTVAKET EFEFWGFVFV MLAAVMSGFR WCMTQVLLQK ETFGLKNPFI FMSCVAPVMA IATGLLSLLL DPWSEFRDNK YFDSGAHFAR
301: TCFLMLFGGA LAFCMVLTEY VLVSVTSAVT VTIAGVVKEA VTIVVAVFYF HDEFTWLKGV GLMIIMVGVS LFNWYKYDKL QKGHKTEEEK QLQAPSQTGK
401: YVILDEMDDQ ENSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)