AT2G13100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.928 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 3 (TAIR:AT3G47420.1); Has 21024 Blast hits to 20758 proteins in 2103 species: Archae - 375; Bacteria - 17368; Metazoa - 1290; Fungi - 904; Plants - 279; Viruses - 0; Other Eukaryotes - 808 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5390206..5391764 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53059.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQSRIVGLAP AFSLFPNLNT PHKTFTFHQI LVLIITFTAY ASFHASRKPP SIVKSVLGPP SLNSSSIDNG WAPFNGTQGT KRLGELDLAF LSSYALGMYF 101: AGHLGDRIDL RYFLVFGMMG SGILTLVFGL GYWMNVHTLG FYMSVQIVCG LFQSIGWPCV VSVVGNWCGK EKRGLIMGLW NSHTSVGNIL GSVIASSVLD 201: FGWGWSFVLP GVLVLVSGVV VFMFLVVSPN DLGFEELGKE IEIEMSLGEN VEESLRKHEA EGAVLLENVD DSSFAIGFLE AWRLPGVAPY AFCLFFSKLV 301: AYTFLYWLPY YLRHTAVAGV NLSHKTAGIL STVFDVGGVL GGISAGFISD KIKARALTSI TFLALSIPAL IMYRVYGSVS MFINIVLMFI SGLLVNGPYA 401: LITTAVAADL GTQDSIKGNG RALATVTAII DGTGSVGAAL GPLLAGYISS RGWNSVFFML IVSIFFAGLF LVRLAKSEIN TMRSGELIAS SVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)