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AT3G07080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.852
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EamA-like transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EamA-like transporter family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: EamA-like transporter family (TAIR:AT4G32140.1); Has 3286 Blast hits to 3282 proteins in 690 species: Archae - 51; Bacteria - 1416; Metazoa - 341; Fungi - 278; Plants - 200; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0697eggNOG:KOG2765EMBL:AC012395EMBL:BT008641
EMBL:BT015790EMBL:CP002686EnsemblPlants:AT3G07080EnsemblPlants:AT3G07080.1
entrez:819894GeneID:819894GO:GO:0006810GO:GO:0016021
Gramene:AT3G07080.1hmmpanther:PTHR23051hmmpanther:PTHR23051:SF1HOGENOM:HOG000242026
InterPro:IPR009262KEGG:ath:AT3G07080KO:K15289OMA:MDYIGAA
Pfam:PF06027PhylomeDB:Q9SFT8Proteomes:UP000006548RefSeq:NP_187364.1
STRING:3702.AT3G07080.1SUPFAM:0043518TAIR:AT3G07080TCDB:2.A.7.24.4
TMHMM:TMhelixUniGene:At.27767UniGene:At.40406UniProt:Q9SFT8
Coordinates (TAIR10) chr3:+:2241360..2242934
Molecular Weight (calculated) 47684.20 Da
IEP (calculated) 4.99
GRAVY (calculated) 0.48
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTKLWRWVL GLIYLFAVAT IWIAASFVVQ SVVEAGVSPF LITFICNSLF VVYLPLFEIG RYLEDAYGSL LFWRSKRSHL MELVESEKAV LLGKDVSGVK
101: SDATESSGLV VREQEISEGG NGIESGLENI ELEIDASVNV SDGASGVSNK GLDEKGRWTR MRVAKVSLVI CPFWFLAQLT FNVSLKYTTV TSNTILSSAS
201: SLFTFLVSLI FLGEKFTWLK LFSVLLCMSG TIIVSMGDSE SKSNAVAKNP LLGDILSLVS AALYAVYITL IRKKLPDDDE RNGRVSMAQF LGFLGLFNFF
301: IFLPPALILN FTKRERFNAL TLKQFGLVVG KGLLDNVLSD YLWAKAVLLT TTTVATAGLT IQVPLAAIVD SLSGNKPSFT DYIGAAAVMV GFAGINIPSE
401: MFCKSKETAI ELEPGTSFTD PPPIVPDSIR VDSSLTVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)