AT1G19370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6692904..6694721 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67531.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADPLNGKSF FICFSLLFSF TLLFISPLYA TESPVIEDVS TDVAVSVSET NREAVLLHNL EELVKNLTEL VANLDAKLSA TPLKEKNEIS VDDDIGEEKE 101: RGRAKAFSVT KYSPFWSERF QFTSAVKLNS DATCINVLPF RDFEGSSKYF AIGDSKGRVY VFLRNGDVLI EFFTTVDSPV TAMVSYSSVF KNSSFVVTGH 201: QNGAVLLHRI HEGSNGEDWN SNSVSMEHVG KFDVDDSADP VTLLEVHHVG RVRYILATDL SGKLTVLTEN RTVYGSVIPS SRPLVFLKQR LLFLTESGAG 301: SLDLRSMKIR ETECEGLNHS LARTYVFDAA ERSKAYGFTS EGEIIHVLLH GDIMNFKCRV RSKKKFQMEE PVALQSIKGY LLVINEEKVF AFNVSTQHYV 401: RTAGPRLLFS AGLEEIRSAF LSHRESSSRT TTVVKTRPLI ASDRENLLVI GLENGYFAVY KSKLPTLKGD FNTMLWSSPV FFFILFLFGA WHFFAKKKES 501: LTAWGPDDPF TPTGAQNSSA KEPTFTEPSR RNDDLMDLRR RYAGGSYRSV GANDPSSRAP VDGNYRTTAQ DHNNYRGGGS GLDSNGFGNR RDHLFGNNKV 601: LDNES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)